New insights into lipid-Nucleoside Diphosphate Kinase-D interaction mechanism: protein structural changes and membrane reorganisation.

L Francois-Moutal, O Maniti, O Marcillat, T Granjon
Author Information
  1. L Francois-Moutal: Université de Lyon, Université Lyon 1, CNRS, UMR 5246, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires, IMBL, 43 Bd du 11 Novembre 1918 F-69622 Villeurbanne, France.

Abstract

Nucleoside Diphosphate Kinases (NDPKs) have long been considered merely as housekeeping enzymes. The discovery of the NME1 gene, an anti-metastatic gene coding for NDPK-A, led the scientific community to re-evaluate their role in the cell. It is now well established that the NDPK family is more complex than what was first thought, and despite the increasing amount of evidence suggesting the multifunctional role of nm23/NDPKs, the specific functions of each family member are still elusive. Among these isoforms, NDPK-D is the only one to present a mitochondria-targeting sequence. It has recently been shown that this protein is able to bind and cross-link with mitochondrial membranes, suggesting that NDPK-D can mediate contact sites and contributes to the mitochondrial intermembrane space structuring. To better understand the influence of NDPK-D on mitochondrial lipid organisation, we analysed its behaviour in different lipid environments. We found that NDPK-D not only interacts with CL or anionic lipids, but is also able to bind in a non negligible manner to zwitterionic PC. NDPK-D alters membrane organisation in terms of fluidity, hydration and lipid clustering, effects which depend on lipid structure. Changes in the protein structure after lipid binding were evidenced, both by fluorescence and infrared spectroscopy, regardless of membrane composition. Taking into account all these elements, a putative mechanism of interaction between NDPK-D and zwitterionic or anionic lipids was proposed.

MeSH Term

Anions
Bacteria
Cell Membrane
Cross-Linking Reagents
Humans
Lipids
Liposomes
Mitochondria
Models, Biological
Molecular Conformation
Nucleoside Diphosphate Kinase D
Phosphatidylcholines
Pressure
Protein Binding
Protein Conformation
Proteins
Spectrometry, Fluorescence
Spectrophotometry, Infrared

Chemicals

Anions
Cross-Linking Reagents
Lipids
Liposomes
Phosphatidylcholines
Proteins
Nucleoside Diphosphate Kinase D

Word Cloud

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