Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.

Richard Sherva, Yorghos Tripodis, David A Bennett, Lori B Chibnik, Paul K Crane, Philip L de Jager, Lindsay A Farrer, Andrew J Saykin, Joshua M Shulman, Adam Naj, Robert C Green, GENAROAD Consortium, Alzheimer's Disease Neuroimaging Initiative, Alzheimer's Disease Genetics Consortium
Author Information
  1. Richard Sherva: Department of Medicine (Biomedical Genetics), Boston University School of Medicine, Boston, MA, USA. Electronic address: rcgreen@genetics.med.harvard.edu.
  2. Yorghos Tripodis: Department of Biostatistics, Boston University School of Public Health, Boston, MA, USA.
  3. David A Bennett: Rush Alzheimer's Disease Center, Department of Neurological Sciences, Rush University Medical Center, Chicago, IL, USA.
  4. Lori B Chibnik: Program in Translational NeuroPsychiatric Genomics, Institute for the Neurosciences, Departments of Neurology & Psychiatry, Brigham and Women's Hospital Boston, MA, USA; Department of Neurology, Harvard Medical School, Cambridge, MA, USA; Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
  5. Paul K Crane: School of Medicine, University of Washington, Seattle, WA, USA.
  6. Philip L de Jager: Program in Translational NeuroPsychiatric Genomics, Institute for the Neurosciences, Departments of Neurology & Psychiatry, Brigham and Women's Hospital Boston, MA, USA; Department of Neurology, Harvard Medical School, Cambridge, MA, USA; Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
  7. Lindsay A Farrer: Department of Medicine (Biomedical Genetics), Boston University School of Medicine, Boston, MA, USA; Department of Biostatistics, Boston University School of Public Health, Boston, MA, USA; Departments Ophthalmology, Neurology, and Epidemiology, Boston University Schools of Medicine and Public Health, Boston, MA, USA.
  8. Andrew J Saykin: Department of Medical and Molecular Genetics, Center for Neuroimaging, Department of Radiology and Imaging Sciences, Melvin and Bren Simon Cancer Center, Indiana University School of Medicine, Indianapolis, IN, USA.
  9. Joshua M Shulman: Departments of Neurology and Molecular and Human Genetics Baylor College of Medicine Jan and Dan Duncan Neurological Research Institute, Houston, TX, USA.
  10. Adam Naj: Department of Biostatics and Epidemiology and Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania, Philadelphia, PA, USA.
  11. Robert C Green: Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.

Abstract

BACKGROUND: Substantial interindividual variability exists in the disease trajectories of Alzheimer's disease (AD) patients. Some decline rapidly whereas others decline slowly, and there are no known explanations for this variability. We describe the first genome-wide association study to examine rate of cognitive decline in a sample of AD patients with longitudinal measures of cognition.
METHODS: The discovery sample was 303 AD cases recruited in the Alzheimer's Disease Neuroimaging Initiative and the replication sample was 323 AD cases from the Religious Orders Study and Rush Memory and Aging Project. In the discovery sample, Alzheimer's Disease Assessment Scale-cognitive subscale responses were tested for association with genome-wide single-nucleotide polymorphism (SNP) data using linear regression. We tested the 65 most significant SNPs from the discovery sample for association in the replication sample.
RESULTS: We identified SNPs in the spondin 1 gene (SPON1), the minor alleles of which were significantly associated with a slower rate of decline (rs11023139, P = 7.0 × 10(-11)) in the discovery sample. A SPON1 SNP 5.5 kb upstream was associated with decline in the replication sample (rs11606345, P = .002).
CONCLUSION: SPON1 has not been previously associated with AD risk, but is plausibly related because the gene product binds to the amyloid precursor protein and inhibits its cleavage by β-secretase. These data suggest that SPON1 may be associated with the differential rate of cognitive decline in AD.

Keywords

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Grants

  1. K01 AG030514/NIA NIH HHS
  2. P30AG010129/NIA NIH HHS
  3. AG027841/NIA NIH HHS
  4. K25 AG041906/NIA NIH HHS
  5. U01 AG032984/NIA NIH HHS
  6. U01AG024904/NIA NIH HHS
  7. U01 AG016976/NIA NIH HHS
  8. P30 AG013846/NIA NIH HHS
  9. K24 AG027841/NIA NIH HHS
  10. R01 HG002213/NHGRI NIH HHS
  11. P30 AG010129/NIA NIH HHS
  12. R01 AG015819/NIA NIH HHS
  13. U01 HG006375/NHGRI NIH HHS
  14. R01 AG019771/NIA NIH HHS
  15. K08 AG034290/NIA NIH HHS
  16. P30 AG010133/NIA NIH HHS
  17. U24 AG021886/NIA NIH HHS
  18. U01 AG024904/NIA NIH HHS
  19. U19 AG010483/NIA NIH HHS
  20. UO1 AG032984/NIA NIH HHS
  21. HG02213/NHGRI NIH HHS
  22. UL1 TR001108/NCATS NIH HHS

MeSH Term

Aged
Aged, 80 and over
Alzheimer Disease
Apolipoprotein E4
Cognition Disorders
Extracellular Matrix Proteins
Female
Follow-Up Studies
Genome-Wide Association Study
Genotype
Humans
Male
Neuropsychological Tests
Phenotype
Polymorphism, Single Nucleotide

Chemicals

Apolipoprotein E4
Extracellular Matrix Proteins
SPON1 protein, human

Word Cloud

Created with Highcharts 10.0.0declinesampleADAlzheimer'sdiseaseassociationratediscoverySPON1associatedcognitivereplicationvariabilitypatientsgenome-widestudycasesDiseasetestedSNPdataSNPsgene5BACKGROUND:SubstantialinterindividualexiststrajectoriesrapidlywhereasothersslowlyknownexplanationsdescribefirstexaminelongitudinalmeasurescognitionMETHODS:303recruitedNeuroimagingInitiative323ReligiousOrdersStudyRushMemoryAgingProjectAssessmentScale-cognitivesubscaleresponsessingle-nucleotidepolymorphismusinglinearregression65significantRESULTS:identifiedspondin1minorallelessignificantlyslowerrs11023139P = 70 × 10-11kbupstreamrs11606345P=002CONCLUSION:previouslyriskplausiblyrelatedproductbindsamyloidprecursorproteininhibitscleavageβ-secretasesuggestmaydifferentialGenome-wideCognitiveGWAS

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