A Bayesian semiparametric model for bivariate sparse longitudinal data.

Kiranmoy Das, Runze Li, Subhajit Sengupta, Rongling Wu
Author Information
  1. Kiranmoy Das: Department of Statistics, Temple University, Philadelphia, PA 19122, U.S.A.

Abstract

Mixed-effects models have recently become popular for analyzing sparse longitudinal data that arise naturally in biological, agricultural and biomedical studies. Traditional approaches assume independent residuals over time and explain the longitudinal dependence by random effects. However, when bivariate or multivariate traits are measured longitudinally, this fundamental assumption is likely to be violated because of intertrait dependence over time. We provide a more general framework where the dependence of the observations from the same subject over time is not assumed to be explained completely by the random effects of the model. We propose a novel, mixed model-based approach and estimate the error-covariance structure nonparametrically under a generalized linear model framework. We use penalized splines to model the general effect of time, and we consider a Dirichlet process mixture of normal prior for the random-effects distribution. We analyze blood pressure data from the Framingham Heart Study where body mass index, gender and time are treated as covariates. We compare our method with traditional methods including parametric modeling of the random effects and independent residual errors over time. We conduct extensive simulation studies to investigate the practical usefulness of the proposed method. The current approach is very helpful in analyzing bivariate irregular longitudinal traits.

Keywords

References

  1. J Stat Softw. 2010;33(1):1-22 [PMID: 20808728]
  2. Biometrics. 1994 Sep;50(3):689-99 [PMID: 7981395]
  3. Biometrics. 2007 Mar;63(1):280-9 [PMID: 17447954]
  4. Hum Hered. 2011;72(2):110-20 [PMID: 21996601]
  5. Stat Med. 2013 Feb 10;32(3):509-23 [PMID: 22903809]
  6. Aust N Z J Stat. 2010 Sep;52(3):275-288 [PMID: 21731424]
  7. Biometrics. 2011 Jun;67(2):454-66 [PMID: 20880012]
  8. Biometrics. 1998 Sep;54(3):921-38 [PMID: 9750242]
  9. Biometrics. 1982 Dec;38(4):963-74 [PMID: 7168798]
  10. Biometrics. 2010 Mar;66(1):70-8 [PMID: 19432777]

Grants

  1. P50 DA010075/NIDA NIH HHS
  2. N01 HC025195/NHLBI NIH HHS
  3. R01 GM031575/NIGMS NIH HHS
  4. 1U54RR023496/NCRR NIH HHS
  5. P50-DA10075-16/NIDA NIH HHS

MeSH Term

Adult
Aged
Aged, 80 and over
Algorithms
Bayes Theorem
Blood Pressure
Body Mass Index
Computer Simulation
Female
Humans
Longitudinal Studies
Male
Middle Aged
Models, Statistical
Multivariate Analysis
Sex Factors

Word Cloud

Created with Highcharts 10.0.0timelongitudinalmodeldatadependencerandomeffectsbivariateanalyzingsparsestudiesindependenttraitsgeneralframeworkapproachpenalizedsplinesDirichletprocessmixturemethodMixed-effectsmodelsrecentlybecomepopulararisenaturallybiologicalagriculturalbiomedicalTraditionalapproachesassumeresidualsexplainHowevermultivariatemeasuredlongitudinallyfundamentalassumptionlikelyviolatedintertraitprovideobservationssubjectassumedexplainedcompletelyproposenovelmixedmodel-basedestimateerror-covariancestructurenonparametricallygeneralizedlinearuseeffectconsidernormalpriorrandom-effectsdistributionanalyzebloodpressureFraminghamHeartStudybodymassindexgendertreatedcovariatescomparetraditionalmethodsincludingparametricmodelingresidualerrorsconductextensivesimulationinvestigatepracticalusefulnessproposedcurrenthelpfulirregularBayesiansemiparametricCholeskydecompositionMCMCdevianceinformationcriterion

Similar Articles

Cited By