Copper-induced deregulation of microRNA expression in the zebrafish olfactory system.

Lu Wang, Theo K Bammler, Richard P Beyer, Evan P Gallagher
Author Information
  1. Lu Wang: Department of Environmental and Occupational Health Sciences, University of Washington, Seattle, Washington, United States.

Abstract

Although environmental trace metals, such as copper (Cu), can disrupt normal olfactory function in fish, the underlying molecular mechanisms of metal-induced olfactory injury have not been elucidated. Current research has suggested the involvement of epigenetic modifications. To address this hypothesis, we analyzed microRNA (miRNA) profiles in the olfactory system of Cu-exposed zebrafish. Our data revealed 2, 10, and 28 differentially expressed miRNAs in a dose-response manner corresponding to three increasing Cu concentrations. Numerous deregulated miRNAs were involved in neurogenesis (e.g., let-7, miR-7a, miR-128, and miR-138), indicating a role for Cu-mediated toxicity via interference with neurogenesis processes. Putative gene targets of deregulated miRNAs were identified when interrogating our previously published microarray database, including those involved in cell growth and proliferation, cell death, and cell morphology. Moreover, several miRNAs (e.g., miR-203a, miR-199*, miR-16a, miR-16c, and miR-25) may contribute to decreased mRNA levels of their host genes involved in olfactory signal transduction pathways and other critical neurological processes via a post-transcriptional mechanism. Our findings provide novel insight into the epigenetic regulatory mechanisms of metal-induced neurotoxicity of the fish olfactory system and identify novel miRNA biomarkers of metal exposures.

References

  1. Cell. 2009 Feb 20;136(4):642-55 [PMID: 19239886]
  2. Nat Cell Biol. 2009 Jun;11(6):705-16 [PMID: 19465924]
  3. Inhal Toxicol. 2008 Oct;20(13):1169-77 [PMID: 18951233]
  4. Environ Sci Technol. 2007 Apr 15;41(8):2998-3004 [PMID: 17533870]
  5. Nucleic Acids Res. 2013 Mar 1;41(5):2817-31 [PMID: 23335783]
  6. Genome Biol. 2007;8(8):R173 [PMID: 17711588]
  7. Nat Rev Genet. 2005 Apr;6(4):324-33 [PMID: 15803200]
  8. Tissue Cell. 1996 Jun;28(3):367-77 [PMID: 18621333]
  9. Mol Cell. 2011 May 20;42(4):500-10 [PMID: 21596314]
  10. Trends Cell Biol. 2008 Oct;18(10):505-16 [PMID: 18774294]
  11. Science. 2005 Jul 8;309(5732):310-1 [PMID: 15919954]
  12. Environ Toxicol Chem. 2003 Oct;22(10):2266-74 [PMID: 14551988]
  13. J Neurosci. 2010 Nov 10;30(45):14931-6 [PMID: 21068294]
  14. Trends Genet. 2011 Aug;27(8):316-22 [PMID: 21763027]
  15. J Immunol. 2010 Jun 1;184(11):6053-9 [PMID: 20410487]
  16. Front Neurosci. 2012 Mar 12;6:30 [PMID: 22416227]
  17. J Neurosci. 2012 Aug 1;32(31):10662-73 [PMID: 22855815]
  18. Stem Cell Rev Rep. 2012 Dec;8(4):1129-37 [PMID: 23054963]
  19. Neuron. 2011 Aug 11;71(3):389-405 [PMID: 21835338]
  20. Chemosphere. 2001 Aug;44(5):997-1009 [PMID: 11513434]
  21. Biochem Pharmacol. 2013 Mar 15;85(6):839-48 [PMID: 23261526]
  22. Dev Dyn. 2011 Apr;240(4):808-19 [PMID: 21360794]
  23. Cell Mol Life Sci. 2012 Jan;69(1):89-102 [PMID: 21833581]
  24. Biochem Soc Trans. 2008 Dec;36(Pt 6):1211-5 [PMID: 19021527]
  25. Aquat Toxicol. 2012 Jun 15;114-115:134-41 [PMID: 22446825]
  26. Nucleic Acids Res. 2004 Dec 07;32(21):6284-91 [PMID: 15585662]
  27. J Neurosci. 2010 Mar 3;30(9):3254-63 [PMID: 20203184]
  28. Brain Res Brain Res Rev. 2001 Aug;36(1):46-59 [PMID: 11516772]
  29. J Exp Biol. 2003 Jun;206(Pt 11):1779-90 [PMID: 12727999]
  30. Cell. 2008 Oct 17;135(2):227-39 [PMID: 18957199]
  31. J Environ Manage. 2005 Sep;76(4):309-18 [PMID: 15923077]
  32. Dev Cell. 2012 May 15;22(5):1052-64 [PMID: 22595676]
  33. Curr Opin Pediatr. 2009 Apr;21(2):243-51 [PMID: 19663042]
  34. FASEB J. 2007 Feb;21(2):415-26 [PMID: 17167072]
  35. Curr Opin Genet Dev. 2007 Apr;17(2):145-50 [PMID: 17317150]
  36. Environ Sci Technol. 2008 Dec 15;42(24):9404-11 [PMID: 19174923]
  37. Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1876-81 [PMID: 20133835]
  38. Mutat Res. 2011 Nov-Dec;728(3):158-71 [PMID: 21930237]
  39. Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2746-51 [PMID: 16477010]
  40. Neuroscience. 2008 Feb 6;151(3):901-12 [PMID: 18155848]
  41. Aquat Toxicol. 2011 Jan 17;101(1):295-7 [PMID: 20869781]
  42. J Signal Transduct. 2011;2011:905813 [PMID: 22203897]
  43. Aquat Toxicol. 2012 Apr;110-111:37-44 [PMID: 22257444]
  44. Proc Natl Acad Sci U S A. 2006 Sep 26;103(39):14385-9 [PMID: 16983084]
  45. Curr Opin Neurobiol. 1999 Aug;9(4):419-26 [PMID: 10448159]
  46. BMC Syst Biol. 2011 Dec 16;5:199 [PMID: 22176772]
  47. J Biochem Mol Toxicol. 2010 May-Jun;24(3):195-216 [PMID: 20143452]
  48. Proc Natl Acad Sci U S A. 2001 Apr 24;98(9):5116-21 [PMID: 11309499]
  49. Annu Rev Cell Dev Biol. 2007;23:175-205 [PMID: 17506695]
  50. Cell. 2005 Dec 29;123(7):1267-77 [PMID: 16377567]
  51. J Appl Toxicol. 2011 Apr;31(3):210-22 [PMID: 20878907]
  52. Mutat Res. 2011 Sep 1;714(1-2):105-12 [PMID: 21609724]
  53. Cell. 2007 Jun 29;129(7):1389-400 [PMID: 17604726]
  54. Prog Neurobiol. 2007 Jun;82(2):80-6 [PMID: 17433527]
  55. Stat Appl Genet Mol Biol. 2004;3:Article3 [PMID: 16646809]
  56. Mol Cell. 2007 Jun 8;26(5):753-67 [PMID: 17560377]
  57. Cell. 2004 Jan 23;116(2):281-97 [PMID: 14744438]
  58. Aquat Toxicol. 2010 Jan 21;96(1):2-26 [PMID: 19931199]
  59. Toxicol Appl Pharmacol. 2013 Jan 15;266(2):177-86 [PMID: 23174481]
  60. Science. 2005 Dec 16;310(5755):1817-21 [PMID: 16308420]
  61. RNA. 2008 Mar;14(3):432-44 [PMID: 18230762]
  62. Cell. 2009 Mar 6;136(5):913-25 [PMID: 19269368]

Grants

  1. P30 ES007033/NIEHS NIH HHS
  2. P42 ES004696/NIEHS NIH HHS
  3. P30ES07033/NIEHS NIH HHS
  4. P42ES004696/NIEHS NIH HHS

MeSH Term

Animals
Copper
MicroRNAs
Neurogenesis
Olfactory Pathways
Oligonucleotide Array Sequence Analysis
Water Pollutants, Chemical
Zebrafish

Chemicals

MicroRNAs
Water Pollutants, Chemical
Copper

Word Cloud

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