Three-dimensional reconstruction of light microscopy image sections: present and future.

Yuzhen Wang, Rui Xu, Gaoxing Luo, Jun Wu
Author Information
  1. Yuzhen Wang: Institute of Burn Research, Southwest Hospital, State Key Laboratory of Trauma, Burns, and Combined Injury, Chongqing Key Laboratory for Diseases Proteomics, the Third Military Medical University, Chongqing, 400038, China.

Abstract

Three-dimensional (3D) image reconstruction technologies can reveal previously hidden microstructures in human tissue. However, the lack of ideal, non-destructive cross-sectional imaging techniques is still a problem. Despite some drawbacks, histological sectioning remains one of the most powerful methods for accurate high-resolution representation of tissue structures. Computer technologies can produce 3D representations of interesting human tissue and organs that have been serial-sectioned, dyed or stained, imaged, and segmented for 3D visualization. 3D reconstruction also has great potential in the fields of tissue engineering and 3D printing. This article outlines the most common methods for 3D tissue section reconstruction. We describe the most important academic concepts in this field, and provide critical explanations and comparisons. We also note key steps in the reconstruction procedures, and highlight recent progress in the development of new reconstruction methods.

References

  1. Nephron Exp Nephrol. 2006;103(2):e50-4 [PMID: 16543764]
  2. Int J Burns Trauma. 2012;2(2):105-9 [PMID: 23071908]
  3. Med Phys. 1993 Jul-Aug;20(4):1033-48 [PMID: 8413011]
  4. Annu Rev Biomed Eng. 2004;6:209-28 [PMID: 15255768]
  5. Europace. 2012 Nov;14 Suppl 5:v73-v81 [PMID: 23104918]
  6. Yakugaku Zasshi. 2012;132(12):1347-54 [PMID: 23208040]
  7. J Microsc. 1993 Jun;170(Pt 3):229-36 [PMID: 8371260]
  8. Anat Sci Educ. 2010 Sep-Oct;3(5):261-6 [PMID: 20827725]
  9. Anal Chem. 2013 Apr 2;85(7):3723-9 [PMID: 23452251]
  10. Annu Int Conf IEEE Eng Med Biol Soc. 2012;2012:6543-6 [PMID: 23367428]
  11. Micron. 2012 Oct;43(10):1010-30 [PMID: 22658288]
  12. Nature. 2013 Aug 8;500(7461):168-74 [PMID: 23925239]
  13. Opt Express. 2010 May 24;18(11):12002-16 [PMID: 20589062]
  14. Dev Dyn. 2006 Sep;235(9):2386-400 [PMID: 16871621]
  15. J Anat. 2005 May;206(5):477-92 [PMID: 15857367]
  16. J Vis Exp. 2013 Jan 12;(71):e50238 [PMID: 23353681]
  17. Nat Methods. 2008 Jan;5(1):101-8 [PMID: 18165806]
  18. Nat Methods. 2005 Dec;2(12):932-40 [PMID: 16299478]
  19. Curr Opin Neurobiol. 2012 Feb;22(1):162-9 [PMID: 22221862]
  20. IEEE Trans Pattern Anal Mach Intell. 2008 Apr;30(4):617-31 [PMID: 18276968]
  21. J Anat. 2006 May;208(5):643-8 [PMID: 16637886]
  22. Dev Dyn. 2002 Nov;225(3):369-75 [PMID: 12412023]
  23. J Microsc. 2008 Apr;230(Pt 1):84-93 [PMID: 18387043]
  24. J Clin Pathol. 2005 Sep;58(9):968-72 [PMID: 16126880]
  25. IEEE Trans Pattern Anal Mach Intell. 1986 Jun;8(6):679-98 [PMID: 21869365]
  26. Br J Radiol. 2004;77 Spec No 2:S140-53 [PMID: 15677356]
  27. Science. 1990 Apr 6;248(4951):73-6 [PMID: 2321027]
  28. Brain Struct Funct. 2007 Sep;212(2):223-30 [PMID: 17717692]
  29. Semin Musculoskelet Radiol. 2004 Jun;8(2):175-83 [PMID: 15195236]
  30. Microsurgery. 2009;29(7):573-7 [PMID: 19308949]
  31. Hum Pathol. 2000 Apr;31(4):464-74 [PMID: 10821494]
  32. Br J Dermatol. 2007 Aug;157(2):325-30 [PMID: 17596168]
  33. Micron. 2007;38(5):492-9 [PMID: 17045805]
  34. Anat Rec B New Anat. 2003 Dec;275(1):190-5 [PMID: 14628319]
  35. Annu Rev Biomed Eng. 2000;2:315-37 [PMID: 11701515]
  36. Skin Res Technol. 2010 Aug;16(3):378-84 [PMID: 20637008]
  37. Am J Anat. 1989 Sep;186(1):55-68 [PMID: 2782288]
  38. Nat Neurosci. 2011 Jul 10;14(8):1081-8 [PMID: 21743472]
  39. BMC Cancer. 2013 Sep 05;13:408 [PMID: 24010502]
  40. Annu Int Conf IEEE Eng Med Biol Soc. 2012;2012:5298-301 [PMID: 23367125]
  41. Ann Bot. 2011 Apr;107(5):843-53 [PMID: 21289027]
  42. Micron. 2013 May;48:17-25 [PMID: 23465523]
  43. Scanning. 2012 May-Jun;34(3):174-80 [PMID: 21898460]
  44. Comput Med Imaging Graph. 1996 Nov-Dec;20(6):433-47 [PMID: 9007211]
  45. ORL J Otorhinolaryngol Relat Spec. 2007;69(2):63-7 [PMID: 17124433]
  46. Nat Genet. 2002 Jan;30(1):59-65 [PMID: 11743576]
  47. BMC Physiol. 2009 Jun 22;9:11 [PMID: 19545439]
  48. J Microsc. 2009 Feb;233(2):251-7 [PMID: 19220691]
  49. Med Phys. 2011 Sep;38(9):4920-3 [PMID: 21978037]
  50. Opt Lett. 2003 Jun 15;28(12):1022-4 [PMID: 12836766]
  51. Hepatology. 1999 Feb;29(2):494-505 [PMID: 9918927]
  52. Comput Methods Biomech Biomed Engin. 2011 Jul;14(7):581-94 [PMID: 21082462]
  53. IEEE Trans Image Process. 2006 Apr;15(4):969-77 [PMID: 16579382]
  54. PLoS Biol. 2004 Nov;2(11):e329 [PMID: 15514700]
  55. BMC Dev Biol. 2010 Apr 21;10:41 [PMID: 20409315]
  56. Mod Pathol. 2004 Jun;17(6):728-31 [PMID: 15073600]
  57. J Neurosci Methods. 2002 Oct 15;120(1):11-6 [PMID: 12351202]
  58. Int J Med Inform. 2000 Sep;58-59:29-37 [PMID: 10978907]
  59. J Opt Soc Am A Opt Image Sci Vis. 2010 Jan;27(1):31-9 [PMID: 20035300]
  60. Comput Methods Biomech Biomed Engin. 2010;13(2):235-46 [PMID: 19657801]
  61. PLoS One. 2012;7(4):e34427 [PMID: 22509302]
  62. Adv Biochem Eng Biotechnol. 2005;95:201-43 [PMID: 16080270]
  63. Int J Pharm. 2013 Mar 10;445(1-2):125-33 [PMID: 23402981]
  64. Med Image Comput Comput Assist Interv. 2010;13(Pt 3):163-71 [PMID: 20879396]
  65. Comput Methods Programs Biomed. 2005 May;78(2):101-14 [PMID: 15848266]
  66. Methods Mol Biol. 2013;966:121-31 [PMID: 23299732]
  67. Phys Med Biol. 2001 Mar;46(3):R1-45 [PMID: 11277237]
  68. Annu Int Conf IEEE Eng Med Biol Soc. 2011;2011:5149-52 [PMID: 22255498]

MeSH Term

Humans
Image Interpretation, Computer-Assisted
Imaging, Three-Dimensional
Microscopy
Microtomy
Tissue Engineering
Tissue Scaffolds

Word Cloud

Created with Highcharts 10.0.03DreconstructiontissuemethodsThree-dimensionalimagetechnologiescanhumanalsorevealpreviouslyhiddenmicrostructuresHoweverlackidealnon-destructivecross-sectionalimagingtechniquesstillproblemDespitedrawbackshistologicalsectioningremainsonepowerfulaccuratehigh-resolutionrepresentationstructuresComputerproducerepresentationsinterestingorgansserial-sectioneddyedstainedimagedsegmentedvisualizationgreatpotentialfieldsengineeringprintingarticleoutlinescommonsectiondescribeimportantacademicconceptsfieldprovidecriticalexplanationscomparisonsnotekeystepsprocedureshighlightrecentprogressdevelopmentnewlightmicroscopysections:presentfuture

Similar Articles

Cited By