Transcriptome analysis of Dastarcus helophoroides (Coleoptera: Bothrideridae) using Illumina HiSeq sequencing.

Wei Zhang, Wang Song, Zhengqing Zhang, Haidong Wang, Miaomiao Yang, Ruijian Guo, Menglou Li
Author Information
  1. Wei Zhang: College of Forestry, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.
  2. Wang Song: College of Forestry, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.
  3. Zhengqing Zhang: College of Forestry, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.
  4. Haidong Wang: Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.
  5. Miaomiao Yang: Shaanxi Institute of Zoology, Xi'an, Shaanxi, People's Republic of China.
  6. Ruijian Guo: College of Forestry, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.
  7. Menglou Li: College of Forestry, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.

Abstract

BACKGROUND: Dastarcus helophoroides is known as the most valuable natural enemy insect against many large-body longhorned beetles. The molecular mechanism of its long lifespan and reproduction makes it a unique resource for genomic research. However, molecular biological studies on this parasitic beetle are scarce, and genomic information for D. helophoroides is not currently available. Thus, transcriptome information for this species is an important resource that is required for a better understanding of the molecular mechanisms of D. helophoroides. In this study, we obtained transcriptome information of D. helophoroides using high-throughput RNA sequencing.
RESULTS: Using Illumina HiSeq 2000 sequencing, 27,543,746 clean reads corresponding to a total of 2.48 Gb nucleotides were obtained from a single run. These reads were assembled into 42,810 unigenes with a mean length of 683 bp. Using a sequence similarity search against the five public databases (NR, Swiss-Prot, GO, COG, KEGG) with a cut-off E-value of 10(-5) using Blastx, a total of 31,293 unigenes were annotated with gene description, gene ontology terms, or metabolic pathways.
CONCLUSIONS: To the best of our knowledge, this is the first study on the transcriptome information of D. helophoroides. The transcriptome data presented in this study provide comprehensive information for future studies in D. helophoroides, particularly for functional genomic studies in this parasitic beetle.

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MeSH Term

Animals
Biological Control Agents
Coleoptera
Databases, Genetic
Female
Genome, Insect
High-Throughput Nucleotide Sequencing
Longevity
Male
Metabolic Networks and Pathways
Molecular Sequence Annotation
Reproduction
Transcriptome

Chemicals

Biological Control Agents

Word Cloud

Created with Highcharts 10.0.0helophoroidesinformationDtranscriptomemoleculargenomicstudiesstudyusingsequencingDastarcusresourceparasiticbeetleobtainedUsingIlluminaHiSeqreadstotalunigenesgeneBACKGROUND:knownvaluablenaturalenemyinsectmanylarge-bodylonghornedbeetlesmechanismlonglifespanreproductionmakesuniqueresearchHoweverbiologicalscarcecurrentlyavailableThusspeciesimportantrequiredbetterunderstandingmechanismshigh-throughputRNARESULTS:200027543746cleancorresponding248Gbnucleotidessinglerunassembled42810meanlength683bpsequencesimilaritysearchfivepublicdatabasesNRSwiss-ProtGOCOGKEGGcut-offE-value10-5Blastx31293annotateddescriptionontologytermsmetabolicpathwaysCONCLUSIONS:bestknowledgefirstdatapresentedprovidecomprehensivefutureparticularlyfunctionalTranscriptomeanalysisColeoptera:Bothrideridae

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