Influencing factors and applicability of the viability EMA-qPCR for a detection and quantification of Campylobacter cells from water samples.

Diana Seinige, Maren von Köckritz-Blickwede, Carsten Krischek, Günter Klein, Corinna Kehrenberg
Author Information
  1. Diana Seinige: Institute of Food Quality and Food Safety, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
  2. Maren von Köckritz-Blickwede: Institute for Physiological Chemistry, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
  3. Carsten Krischek: Institute of Food Quality and Food Safety, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
  4. Günter Klein: Institute of Food Quality and Food Safety, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.
  5. Corinna Kehrenberg: Institute of Food Quality and Food Safety, University of Veterinary Medicine Hannover, Foundation, Hannover, Germany.

Abstract

In recent years, increasing numbers of human campylobacteriosis cases caused by contaminated water have been reported. As the culture-based detection of Campylobacter is time consuming and can yield false-negative results, the suitability of a quantitative real-time PCR method in combination with an ethidium monoazide pretreatment of samples (EMA-qPCR) for the rapid, quantitative detection of viable Campylobacter cells from water samples was investigated. EMA-qPCR has been shown to be a promising rapid method for the detection of viable Campylobacter spp. from food samples. Application of membrane filtration and centrifugation, two methods frequently used for the isolation of bacteria from water, revealed a mean loss of up to 1.08 log10 cells/ml from spiked samples. Both methods used alone lead to a loss of dead bacteria and accumulation of viable bacteria in the sample as shown by fluorescence microscopy. After filtration of samples, no significant differences could be detected in subsequent qPCR experiments with and without EMA pretreatment compared to culture-based enumeration. High correlations (R(2)= 0.942 without EMA, R(2) = 0.893 with EMA) were obtained. After centrifugation of samples, qPCR results overestimated Campylobacter counts, whereas results from both EMA-qPCR and the reference method were comparable. As up to 81.59% of nonviable cells were detected in pond water, EMA-qPCR failed to detect correct quantities of viable cells. However, analyses of spiked tap water samples revealed a high correlation (R(2) = 0.863) between results from EMA-qPCR and the reference method. After membrane filtration, EMA-qPCR was successfully applied to Campylobacter field isolates, and results indicated an advantage over qPCR by analysing defined mixtures of viable and nonviable cells. In conclusion, EMA-qPCR is a suitable method to detect viable Campylobacter from water samples, but the isolation technique and the type/quality of the water sample impact the results.

References

  1. Emerg Infect Dis. 2003 Oct;9(10):1219-25 [PMID: 14609455]
  2. Epidemiol Infect. 2006 Dec;134(6):1141-9 [PMID: 16690002]
  3. Appl Environ Microbiol. 2009 Jun;75(11):3502-12 [PMID: 19363080]
  4. J Appl Microbiol. 2010 Sep;109(3):1053-66 [PMID: 20408936]
  5. J Microbiol Methods. 2007 Dec;71(3):336-9 [PMID: 17936386]
  6. Epidemiol Infect. 2005 Aug;133(4):593-601 [PMID: 16050503]
  7. Scand J Infect Dis. 2012 Aug;44(8):586-94 [PMID: 22385125]
  8. Clin Microbiol Infect. 2004 Oct;10(10):868-76 [PMID: 15373879]
  9. J Microbiol Methods. 2013 Oct;95(1):39-47 [PMID: 23810971]
  10. EFSA J. 2018 Dec 12;16(12):e05500 [PMID: 32625785]
  11. Water Res. 2004 Mar;38(5):1340-6 [PMID: 14975667]
  12. J Appl Microbiol. 2012 Oct;113(4):863-73 [PMID: 22747901]
  13. Water Res. 2011 Jan;45(3):1247-57 [PMID: 20971491]
  14. Appl Environ Microbiol. 2012 Feb;78(3):839-45 [PMID: 22138985]
  15. Int J Food Microbiol. 2011 Mar 1;145 Suppl 1:S86-95 [PMID: 20855120]
  16. Appl Environ Microbiol. 2010 Aug;76(15):5097-104 [PMID: 20562292]
  17. Appl Environ Microbiol. 2012 Feb;78(4):922-32 [PMID: 22139002]
  18. Sci Total Environ. 2014 Jul 1;485-486:666-680 [PMID: 24747258]
  19. Clin Infect Dis. 2007 Feb 15;44(4):506-12 [PMID: 17243052]
  20. MMWR Surveill Summ. 2004 Oct 22;53(8):23-45 [PMID: 15499307]
  21. Epidemiol Infect. 2013 May;141(5):987-96 [PMID: 22892294]
  22. J Microbiol Methods. 2013 Oct;95(1):32-8 [PMID: 23811205]
  23. Water Res. 2005 Aug;39(13):2877-82 [PMID: 15979120]
  24. Appl Environ Microbiol. 2003 Mar;69(3):1391-6 [PMID: 12620821]
  25. J Microbiol Methods. 2012 Apr;89(1):76-8 [PMID: 22314021]
  26. Food Microbiol. 2011 Oct;28(7):1353-8 [PMID: 21839385]
  27. J Microbiol Methods. 2012 Nov;91(2):276-89 [PMID: 22940102]
  28. J Water Health. 2011 Dec;9(4):695-707 [PMID: 22048429]
  29. Water Res. 2014 Sep 15;61:243-52 [PMID: 24930011]
  30. Appl Environ Microbiol. 2014 Apr;80(7):2186-92 [PMID: 24487529]
  31. Appl Environ Microbiol. 2005 Feb;71(2):1018-24 [PMID: 15691961]
  32. Epidemiol Infect. 2010 Dec;138(12):1726-34 [PMID: 20836911]
  33. J Microbiol Methods. 2009 Dec;79(3):307-13 [PMID: 19818368]
  34. Appl Environ Microbiol. 2013 Oct;79(19):5799-813 [PMID: 23835181]

MeSH Term

Azides
Bacterial Load
Campylobacter
Centrifugation
DNA, Bacterial
Filtration
Fresh Water
Microbial Viability
Microscopy, Fluorescence
Real-Time Polymerase Chain Reaction

Chemicals

Azides
DNA, Bacterial
8-azidoethidium

Word Cloud

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