Purification of noncoding RNA and bound proteins using FLAG peptide-conjugated antisense-oligonucleotides.

Shungo Adachi, Tohru Natsume
Author Information
  1. Shungo Adachi: Molecular Profiling Research Center for Drug Discovery (molprof), National Institute of Advanced Industrial Science and Technology (AIST), 2-4-7 Aomi, Koto-ku, Tokyo, 135-0064, Japan.

Abstract

To understand the function of certain RNAs, including noncoding RNAs, it is important to identify the proteins that interact with the RNAs. Here we describe the method for purification of ribonucleoprotein (RNP) complexes composed of specific cellular RNAs by pull-down with FLAG peptide-conjugated antisense oligonucleotide (ASO). Using this method, we identified a novel protein component of U7 snRNP complex.

MeSH Term

HeLa Cells
Humans
Mass Spectrometry
Oligonucleotides, Antisense
Oligopeptides
Protein Binding
RNA, Untranslated
Ribonucleoprotein, U7 Small Nuclear

Chemicals

Oligonucleotides, Antisense
Oligopeptides
RNA, Untranslated
Ribonucleoprotein, U7 Small Nuclear
FLAG peptide

Word Cloud

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