Systems Biology Approaches Applied to Regenerative Medicine.

Laura E McNamara, Lesley-Anne Turner, Karl V Burgess
Author Information
  1. Laura E McNamara: Centre for Cell Engineering, University of Glasgow, Glasgow, G12 8QQ UK.
  2. Lesley-Anne Turner: Centre for Cell Engineering, University of Glasgow, Glasgow, G12 8QQ UK.
  3. Karl V Burgess: Glasgow Polyomics, TCRC, University of Glasgow, Garscube Campus, Glasgow, G61 1QH UK.

Abstract

Systems biology is the creation of theoretical and mathematical models for the study of biological systems, as an engine for hypothesis generation and to provide context to experimental data. It is underpinned by the collection and analysis of complex datasets from different biological systems, including global gene, RNA, protein and metabolite profiles. Regenerative medicine seeks to replace or repair tissues with compromised function (for example, through injury, deficiency or pathology), in order to improve their functionality. In this paper, we will address the application of systems biology approaches to the study of regenerative medicine, with a particular focus on approaches to study modifications to the genome, transcripts and small RNAs, proteins and metabolites.

Keywords

References

  1. Phytochemistry. 2003 Mar;62(6):929-37 [PMID: 12590120]
  2. Cancer Cell. 2005 Jan;7(1):77-85 [PMID: 15652751]
  3. Anal Chem. 2006 Feb 1;78(3):779-87 [PMID: 16448051]
  4. Acta Biomater. 2009 May;5(4):1137-46 [PMID: 19103513]
  5. Nat Rev Mol Cell Biol. 2009 Feb;10(2):116-25 [PMID: 19165214]
  6. Int J Parasitol Drugs Drug Resist. 2013 Dec 05;4(1):20-7 [PMID: 24596665]
  7. Biomaterials. 2011 Oct;32(30):7403-10 [PMID: 21820172]
  8. Anal Chem. 2014 Feb 4;86(3):1583-91 [PMID: 24397525]
  9. Nat Rev Genet. 2011 Feb;12(2):87-98 [PMID: 21191423]
  10. Nat Protoc. 2006;1(4):1732-42 [PMID: 17487156]
  11. Rapid Commun Mass Spectrom. 2011 Nov 30;25(22):3447-52 [PMID: 22002700]
  12. Nat Mater. 2011 Jul 17;10(8):637-44 [PMID: 21765399]
  13. Nat Biotechnol. 2000 Nov;18(11):1157-61 [PMID: 11062433]
  14. Philos Trans R Soc Lond B Biol Sci. 2011 Aug 12;366(1575):2247-59 [PMID: 21727130]
  15. Anal Bioanal Chem. 2011 Jun;400(7):1967-78 [PMID: 21556754]
  16. Cell Death Dis. 2013 Apr 04;4:e570 [PMID: 23559004]
  17. Nat Protoc. 2011 Jun 30;6(7):1060-83 [PMID: 21720319]
  18. Curr Opin Biotechnol. 2015 Aug;34:1-8 [PMID: 25461505]
  19. J Proteome Res. 2009 Jan;8(1):104-12 [PMID: 18954100]
  20. Rapid Commun Mass Spectrom. 2008 Jun;22(12):1912-8 [PMID: 18470888]
  21. Nat Chem Biol. 2010 Jun;6(6):411-7 [PMID: 20436487]
  22. Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7506-11 [PMID: 23589867]
  23. Nature. 2008 Aug 7;454(7205):766-70 [PMID: 18600261]
  24. J R Soc Interface. 2012 Aug 7;9(73):1713-24 [PMID: 22628210]
  25. Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4846-51 [PMID: 19261854]
  26. Brief Bioinform. 2009 Jul;10(4):435-49 [PMID: 19287049]
  27. Nat Rev Genet. 2009 Jan;10(1):57-63 [PMID: 19015660]
  28. Trends Biotechnol. 1998 Sep;16(9):373-8 [PMID: 9744112]
  29. Stem Cells. 2006 May;24(5):1213-7 [PMID: 16439616]
  30. Nature. 2008 Sep 4;455(7209):58-63 [PMID: 18668040]
  31. Nat Commun. 2014 Feb 26;5:3319 [PMID: 24569529]
  32. Curr Opin Biotechnol. 2014 Oct;29:8-14 [PMID: 24534671]
  33. Nat Methods. 2008 Jul;5(7):621-8 [PMID: 18516045]
  34. Genome Med. 2011 Jun 07;3(6):36 [PMID: 21658297]
  35. J R Soc Interface. 2010 Feb 6;7 Suppl 1:S107-18 [PMID: 19570793]
  36. Proteomics. 2010 Apr;10(7):1359-73 [PMID: 20104618]
  37. Proteomics. 2011 Dec;11(24):4610-21 [PMID: 22002958]
  38. Nat Methods. 2009 Nov;6(11 Suppl):S22-32 [PMID: 19844228]
  39. Biomaterials. 2012 Apr;33(10):2835-47 [PMID: 22248989]
  40. Nature. 2000 Jan 6;403(6765):41-5 [PMID: 10638745]
  41. Bioinformatics. 2012 Apr 1;28(7):1048-9 [PMID: 22308147]
  42. Epigenetics. 2014 Jan;9(1):45-52 [PMID: 24149777]
  43. Nat Biotechnol. 2010 Mar;28(3):245-8 [PMID: 20212490]
  44. Biomaterials. 2009 Jun;30(17):3042-9 [PMID: 19250667]
  45. Nat Biotechnol. 2011 May;29(5):436-42 [PMID: 21516085]
  46. Methods Cell Biol. 2014;119:293-309 [PMID: 24439291]
  47. Curr Opin Biotechnol. 2015 Feb;31:73-8 [PMID: 25197792]
  48. Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):610-5 [PMID: 20080726]
  49. Mol Cell. 2013 Feb 21;49(4):583-90 [PMID: 23438854]
  50. Bioinformatics. 2006 Mar 1;22(5):634-6 [PMID: 16403790]

Word Cloud

Created with Highcharts 10.0.0SystemsbiologystudysystemsRegenerativemedicinebiologicalapproachescreationtheoreticalmathematicalmodelsenginehypothesisgenerationprovidecontextexperimentaldataunderpinnedcollectionanalysiscomplexdatasetsdifferentincludingglobalgeneRNAproteinmetaboliteprofilesseeksreplacerepairtissuescompromisedfunctionexampleinjurydeficiencypathologyorderimprovefunctionalitypaperwilladdressapplicationregenerativeparticularfocusmodificationsgenometranscriptssmallRNAsproteinsmetabolitesBiologyApproachesAppliedMedicineEpigenomicsMetabolomicsProteomicsTranscriptomics

Similar Articles

Cited By