KODAMA: an R package for knowledge discovery and data mining.

Stefano Cacciatore, Leonardo Tenori, Claudio Luchinat, Phillip R Bennett, David A MacIntyre
Author Information
  1. Stefano Cacciatore: Institute of Reproductive and Developmental Biology, Imperial College London, London, UK.
  2. Leonardo Tenori: Department of Clinical and Experimental Medicine.
  3. Claudio Luchinat: Centro Risonanze Magnetiche, University of Florence, Florence, Italy.
  4. Phillip R Bennett: Institute of Reproductive and Developmental Biology, Imperial College London, London, UK.
  5. David A MacIntyre: Institute of Reproductive and Developmental Biology, Imperial College London, London, UK.

Abstract

Summary: KODAMA, a novel learning algorithm for unsupervised feature extraction, is specifically designed for analysing noisy and high-dimensional datasets. Here we present an R package of the algorithm with additional functions that allow improved interpretation of high-dimensional data. The package requires no additional software and runs on all major platforms.
Availability and Implementation: KODAMA is freely available from the R archive CRAN ( http://cran.r-project.org ). The software is distributed under the GNU General Public License (version 3 or later).
Contact: s.cacciatore@imperial.ac.uk.
Supplementary information: Supplementary data are available at Bioinformatics online.

References

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  2. Cancer Res. 2012 Jan 1;72(1):356-64 [PMID: 22080567]
  3. Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5117-22 [PMID: 24706821]
  4. Cancer Res. 2014 Dec 15;74(24):7198-204 [PMID: 25322691]

Grants

  1. MR/L009226/1/Medical Research Council

MeSH Term

Algorithms
Data Mining
Female
Humans
Magnetic Resonance Spectroscopy
Male
Software
Unsupervised Machine Learning
Urinalysis

Word Cloud

Created with Highcharts 10.0.0RpackagedataKODAMAalgorithmhigh-dimensionaladditionalsoftwareavailableSummary:novellearningunsupervisedfeatureextractionspecificallydesignedanalysingnoisydatasetspresentfunctionsallowimprovedinterpretationrequiresrunsmajorplatformsAvailabilityImplementation:freelyarchiveCRANhttp://cranr-projectorgdistributedGNUGeneralPublicLicenseversion3laterContact:scacciatore@imperialacukSupplementaryinformation:SupplementaryBioinformaticsonlineKODAMA:knowledgediscoverymining

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