False-Positive Viability PCR Results: An Association with Microtubes.

Gemma Agustí, Mariana Fittipaldi, Francesc Codony
Author Information
  1. Gemma Agustí: GenIUL, Carrer de la Ciutat d'Assunción 4, 08030, Barcelona, Spain.
  2. Mariana Fittipaldi: Laboratori de Microbiologia Sanitària i Mediambiental (MSM-Lab), Universitat Politècnica de Catalunya, Edifici GAIA, Rambla Sant Nebridi, 22, 08222, Terrassa, Barcelona, Spain.
  3. Francesc Codony: GenIUL, Carrer de la Ciutat d'Assunción 4, 08030, Barcelona, Spain. fcodony@geniul.com.

Abstract

Currently, one of the most challenged points to expand the use of viability PCR technique is achieving the complete exclusion of dead cells amplification signals, thus avoiding the overestimation of live cells population. Considering that, and based on the hypothesis that DNA may be retained by microtube walls, the impact of the microtube was addressed on signals from live and heat-killed cells. A double-dye reagent, PEMAX™, which comprises a mix of photo-reactive azide forms of phenanthridium, was used in this work. We found that if both the incubation and the photoactivation steps are carried out in different microtubes, the dead cell signal is greatly reduced than when those steps are done in the same tube. Therefore, the strategy depicted in this study presents a simple and efficient step in minimizing false-positive signal when employing viability PCR.

References

  1. Ecotoxicol Environ Saf. 2013 Jul;93:121-7 [PMID: 23623706]
  2. J Microbiol Methods. 2013 Apr;93(1):20-4 [PMID: 23389080]
  3. BMC Microbiol. 2013 Dec 01;13:273 [PMID: 24289661]
  4. J Food Sci. 2011 May;76(4):M234-7 [PMID: 22417362]
  5. J Microbiol Methods. 2014 Aug;103:131-7 [PMID: 24927988]
  6. Int J Food Microbiol. 2015 May 18;201:1-6 [PMID: 25720326]
  7. FEMS Microbiol Lett. 2009 Feb;291(2):137-42 [PMID: 19054073]
  8. J Microbiol Methods. 2012 Nov;91(2):276-89 [PMID: 22940102]
  9. Mol Cell Probes. 2015 Jun;29(3):190-2 [PMID: 25797787]
  10. Anal Biochem. 1997 Sep 5;251(2):251-62 [PMID: 9299024]
  11. Appl Environ Microbiol. 2006 Mar;72(3):1997-2004 [PMID: 16517648]
  12. J Food Prot. 2008 Dec;71(12):2436-41 [PMID: 19256088]

MeSH Term

False Positive Reactions
Polymerase Chain Reaction

Word Cloud

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