Skermanella mucosa sp. nov., isolated from crude oil contaminated soil.

Y Subhash, Da-Eun Yoon, Sang-Seob Lee
Author Information
  1. Y Subhash: Department of Life Science, College of Natural Science, Kyonggi University, 94-6 Iui-dong Yeongtong-gu, Suwon, 443-760, Republic of Korea.
  2. Da-Eun Yoon: Department of Life Science, College of Natural Science, Kyonggi University, 94-6 Iui-dong Yeongtong-gu, Suwon, 443-760, Republic of Korea.
  3. Sang-Seob Lee: Department of Life Science, College of Natural Science, Kyonggi University, 94-6 Iui-dong Yeongtong-gu, Suwon, 443-760, Republic of Korea. sslee@kyonggi.ac.kr.

Abstract

A novel Gram-stain negative, small rod-shaped bacterium (strain 8-14-6) was isolated from hydrocarbon contaminated desert soil collected from Kuwait. Strain 8-14-6 grew at 5-37 °C, pH 6.0-8.8 and 0-2% (w/v) of NaCl concentration. Casein, starch, Tween 20 and Tween 80 were hydrolyzed while urea, chitin, DNA and carboxymethyl-cellulose were not hydrolyzed by strain 8-14-6. The major cellular fatty acids were identified as Cω6c/Cω7c, C and iso-CI/C3-OH. Strain 8-14-6 produced diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, an unidentified phospholipids, two unidentified lipids and five unidentified amino lipids as polar lipids. Genomic G+C content was 73.5 mol %. 16S rRNA gene sequence comparisons indicated that strain 8-14-6 represents a member of the genus Skermanella within family Rhodospirillaceae of the class Alphaproteobacteria. Strain 8-14-6 has a sequence similarity of 98.9% with Skermanella rosea M1, 97.4% with Skermanella aerolata 5416T-32, 96.9% with Skermanella stibiiresistens SB22 and <95.4% with the other two known species of the genus Skermanella. The DNA-DNA relatedness values between strain 8-14-6 and the type strains of the closely related species were clearly below the 70% threshold. From the combination of phenotypic and genotypic characteristics and distinct phylogenetic position, the strain is considered to represent a novel species of the genus Skermanella, for which the name Skermanella mucosa sp. nov. is proposed. The type strain is 8-14-6 (=KEMB 2255-438 =JCM 31590).

Keywords

MeSH Term

Bacteria
Bacterial Typing Techniques
Base Composition
DNA, Bacterial
Fatty Acids
Mucous Membrane
Petroleum
Phylogeny
RNA, Ribosomal, 16S
Sequence Analysis, DNA
Soil
Soil Microbiology

Chemicals

DNA, Bacterial
Fatty Acids
Petroleum
RNA, Ribosomal, 16S
Soil

Word Cloud

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