Toward standard practices for sharing computer code and programs in neuroscience.

Stephen J Eglen, Ben Marwick, Yaroslav O Halchenko, Michael Hanke, Shoaib Sufi, Padraig Gleeson, R Angus Silver, Andrew P Davison, Linda Lanyon, Mathew Abrams, Thomas Wachtler, David J Willshaw, Christophe Pouzat, Jean-Baptiste Poline
Author Information
  1. Stephen J Eglen: Cambridge Computational Biology Institute, Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge, UK. ORCID
  2. Ben Marwick: Department of Anthropology, University of Washington, Seattle, Washington, USA. ORCID
  3. Yaroslav O Halchenko: Department of Psychological and Brain Sciences, Dartmouth College, Hanover, New Hampshire, USA. ORCID
  4. Michael Hanke: Institute of Psychology II, Otto-von-Guericke-University Magdeburg, Magdeburg, Germany. ORCID
  5. Shoaib Sufi: Software Sustainability Institute, University of Manchester, Manchester, UK. ORCID
  6. Padraig Gleeson: Department of Neuroscience, Physiology and Pharmacology, University College London, London, UK. ORCID
  7. R Angus Silver: Department of Neuroscience, Physiology and Pharmacology, University College London, London, UK. ORCID
  8. Andrew P Davison: Unité de Neurosciences, Information et Complexité, CNRS, Gif sur Yvette, France. ORCID
  9. Linda Lanyon: International Neuroinformatics Coordinating Facility, Karolinska Institutet, Stockholm, Sweden. ORCID
  10. Mathew Abrams: International Neuroinformatics Coordinating Facility, Karolinska Institutet, Stockholm, Sweden. ORCID
  11. Thomas Wachtler: Department of Biology II, Ludwig-Maximilians-Universität München, Munich, Germany. ORCID
  12. David J Willshaw: Institute for Adaptive and Neural Computation, School of Informatics, University of Edinburgh, Edinburgh, UK. ORCID
  13. Christophe Pouzat: MAP5 Paris-Descartes University and CNRS UMR 8145, Paris, France. ORCID
  14. Jean-Baptiste Poline: Henry H. Wheeler, Jr. Brain Imaging Center, Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, California, USA. ORCID

Abstract

No abstract text available.

References

  1. Science. 2014 Jan 3;343(6166):30-1 [PMID: 24385620]
  2. Front Neuroinform. 2009 Jan 27;2:11 [PMID: 19194529]
  3. Science. 2016 Dec 9;354(6317):1242 [PMID: 27934704]
  4. Front Neuroinform. 2013 Dec 30;7:44 [PMID: 24416014]
  5. Front Neuroinform. 2014 Sep 25;8:79 [PMID: 25309419]
  6. Gigascience. 2014 Mar 26;3(1):3 [PMID: 24666584]
  7. Sci Data. 2016 Jun 21;3:160044 [PMID: 27326542]
  8. PLoS Biol. 2016 Jul 07;14(7):e1002506 [PMID: 27389358]
  9. Nature. 2012 Feb 22;482(7386):485-8 [PMID: 22358837]
  10. J Neurosci. 1998 Apr 1;18(7):2309-20 [PMID: 9502792]
  11. PLoS Comput Biol. 2016 Jul 14;12(7):e1004947 [PMID: 27415786]
  12. Gigascience. 2015 Jul 18;4:31 [PMID: 26191404]
  13. Source Code Biol Med. 2013 Feb 28;8(1):7 [PMID: 23448176]
  14. Biostatistics. 2010 Jul;11(3):385-8 [PMID: 20538873]
  15. PLoS Comput Biol. 2016 Jan 19;12(1):e1004668 [PMID: 26785377]
  16. PeerJ. 2013 Sep 05;1:e148 [PMID: 24032093]
  17. Nature. 2015 May 21;521(7552):261 [PMID: 25993922]
  18. Science. 2012 Apr 13;336(6078):159-60 [PMID: 22499926]
  19. PLoS Biol. 2014 Jan;12(1):e1001745 [PMID: 24415924]
  20. BMC Neurosci. 2015 Jul 23;16:44 [PMID: 26202681]
  21. Front Psychol. 2014 Dec 17;5:1435 [PMID: 25566120]
  22. Science. 2011 Dec 16;334(6062):1569-73 [PMID: 22075724]
  23. J Comput Neurosci. 2004 Jul-Aug;17(1):7-11 [PMID: 15218350]
  24. J Neurosci. 2014 Aug 6;34(32):10743-55 [PMID: 25100605]
  25. Nat Biotechnol. 2015 Apr;33(4):319 [PMID: 25850037]
  26. J Physiol Paris. 2012 May-Aug;106(3-4):159-70 [PMID: 21986476]
  27. Science. 2015 Jun 26;348(6242):1422-5 [PMID: 26113702]
  28. Nature. 2010 Oct 14;467(7317):753 [PMID: 20944687]

Grants

  1. 101445/Wellcome Trust
  2. P41 EB019936/NIBIB NIH HHS

MeSH Term

Computational Biology
Documentation
Information Dissemination
Neurosciences
Software

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