Reconfigurable Analog Signal Processing by Living Cells.

Daniel D Lewis, Michael Chavez, Kwan Lun Chiu, Cheemeng Tan
Author Information
  1. Daniel D Lewis: Department of Biomedical Engineering, University of California Davis , 1 Shields Avenue, Davis, California 95616, United States. ORCID
  2. Michael Chavez: Department of Biomedical Engineering, University of California Davis , 1 Shields Avenue, Davis, California 95616, United States.
  3. Kwan Lun Chiu: Department of Biomedical Engineering, University of California Davis , 1 Shields Avenue, Davis, California 95616, United States.
  4. Cheemeng Tan: Department of Biomedical Engineering, University of California Davis , 1 Shields Avenue, Davis, California 95616, United States.

Abstract

Living cells are known for their capacity for versatile signal processing, particularly the ability to respond differently to the same stimuli using biochemical networks that integrate environmental signals and reconfigure their dynamic responses. However, the complexity of natural biological networks confounds the discovery of fundamental mechanisms behind versatile signaling. Here, we study one specific aspect of reconfigurable signal processing in which a minimal biological network integrates two signals, using one to reconfigure the network's transfer function with respect to the other, producing an emergent switch between induction and repression. In contrast to known mechanisms, the new mechanism reconfigures transfer functions through genetic networks without extensive protein-protein interactions. These results provide a novel explanation for the versatility of genetic programs, and suggest a new mechanism of signal integration that may govern flexibility and plasticity of gene expression.

Keywords

Grants

  1. T32 GM008799/NIGMS NIH HHS
  2. P30 CA093373/NCI NIH HHS
  3. C06 RR012088/NCRR NIH HHS
  4. S10 RR026825/NCRR NIH HHS

MeSH Term

AraC Transcription Factor
DNA-Directed RNA Polymerases
Escherichia coli
Escherichia coli Proteins
Gene Expression Regulation
Gene Regulatory Networks
Green Fluorescent Proteins
Isopropyl Thiogalactoside
Models, Biological
Plasmids
Promoter Regions, Genetic
Signal Transduction
Viral Proteins

Chemicals

AraC Transcription Factor
AraC protein, E coli
Escherichia coli Proteins
Viral Proteins
Green Fluorescent Proteins
Isopropyl Thiogalactoside
bacteriophage T7 RNA polymerase
DNA-Directed RNA Polymerases

Word Cloud

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