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Nov 09, 2017;5 (45):

Genome Sequences of Subcluster K5 Mycobacteriophages AlleyCat, Edugator, and Guillsminger.

Rodney A King, Tina M Slowan-Pomeroy, Jodi E Thomas, Tithe Ahmed, Katie L Alexander, James M Biddle, Makenzie K Daniels, Jenna R Rowlett, Taylor E Senay, Claire A Rinehart, Amanda K Staples, Naomi S Rowland, Bobby L Gaffney, Christine B Emmons, Maya D Hauk, Rebecca L Nguyen, Leonard Naegele, Summer S Strickland, Laura A Briggs, Alexander N Rush, Sanghamitra Saha, Rachna Sadana, Steven G Cresawn, Daniel A Russell, Rebecca A Garlena, Welkin H Pope, Deborah Jacobs-Sera, Graham F Hatfull
Author Information
  1. Rodney A King: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  2. Tina M Slowan-Pomeroy: Department of Biology, Truckee Meadows Community College, Reno, Nevada, USA.
  3. Jodi E Thomas: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  4. Tithe Ahmed: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  5. Katie L Alexander: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  6. James M Biddle: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  7. Makenzie K Daniels: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  8. Jenna R Rowlett: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  9. Taylor E Senay: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  10. Claire A Rinehart: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA. ORCID
  11. Amanda K Staples: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  12. Naomi S Rowland: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  13. Bobby L Gaffney: Department of Biology, Western Kentucky University, Bowling Green, Kentucky, USA.
  14. Christine B Emmons: Department of Biology, Truckee Meadows Community College, Reno, Nevada, USA.
  15. Maya D Hauk: Department of Biology, Truckee Meadows Community College, Reno, Nevada, USA.
  16. Rebecca L Nguyen: Department of Biology, Truckee Meadows Community College, Reno, Nevada, USA.
  17. Leonard Naegele: Department of Biology, Truckee Meadows Community College, Reno, Nevada, USA.
  18. Summer S Strickland: Department of Biology, Truckee Meadows Community College, Reno, Nevada, USA.
  19. Laura A Briggs: Department of Biology, Truckee Meadows Community College, Reno, Nevada, USA.
  20. Alexander N Rush: Department of Biology, University of Housto-Downtown, Houston, Texas, USA.
  21. Sanghamitra Saha: Department of Biology, University of Housto-Downtown, Houston, Texas, USA.
  22. Rachna Sadana: Department of Biology, University of Housto-Downtown, Houston, Texas, USA.
  23. Steven G Cresawn: Department of Biology, James Madison University, Harrisonburg, Virginia, USA. ORCID
  24. Daniel A Russell: Department of Biological Sciences, Pittsburgh, Pennsylvania, USA.
  25. Rebecca A Garlena: Department of Biological Sciences, Pittsburgh, Pennsylvania, USA.
  26. Welkin H Pope: Department of Biological Sciences, Pittsburgh, Pennsylvania, USA. ORCID
  27. Deborah Jacobs-Sera: Department of Biological Sciences, Pittsburgh, Pennsylvania, USA.
  28. Graham F Hatfull: Department of Biological Sciences, Pittsburgh, Pennsylvania, USA gfh@pitt.edu. ORCID
PMID: 29122861 DOI: 10.1128/genomeA.01122-17

Abstract

Bacteriophages AlleyCat, Edugator, and Guillsminger were isolated on mc155 from enriched soil samples. All are members of mycobacteriophage subcluster K5, with genomes of 62,112 to 63,344 bp. Each genome contains 92 to 99 predicted protein-coding genes and one tRNA. Guillsminger is the first mycobacteriophage to carry an IS family transposon.

References

  1. Elife. 2015 Apr 28;4:e06416 [PMID: 25919952]
  2. Nucleic Acids Res. 1997 Mar 1;25(5):955-64 [PMID: 9023104]
  3. Nucleic Acids Res. 2004 Jan 02;32(1):11-6 [PMID: 14704338]
  4. Bioinformatics. 2007 Mar 15;23(6):673-9 [PMID: 17237039]
  5. J Mol Biol. 1990 Oct 5;215(3):403-10 [PMID: 2231712]
  6. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W244-8 [PMID: 15980461]
  7. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W451-4 [PMID: 15980510]
  8. MBio. 2014 Feb 04;5(1):e01051-13 [PMID: 24496795]

Grants

  1. P20 GM103436/NIGMS NIH HHS
Journal Article
Article has an altmetric score of 2

Word Cloud

Created with Highcharts 10.0.0GuillsmingerAlleyCatEdugatormycobacteriophageK5Bacteriophagesisolatedmc155enrichedsoilsamplesmemberssubclustergenomes6211263344 bpgenomecontains9299predictedprotein-codinggenesonetRNAfirstcarryISfamilytransposonGenomeSequencesSubclusterMycobacteriophages

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