Characterization of Population Genetic Structure of red swamp crayfish, Procambarus clarkii, in China.

Shaokui Yi, Yanhe Li, Linlin Shi, Long Zhang, Qingbin Li, Jing Chen
Author Information
  1. Shaokui Yi: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, P. R. China. ORCID
  2. Yanhe Li: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, P. R. China. liyanhe@mail.hzau.edu.cn.
  3. Linlin Shi: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, P. R. China.
  4. Long Zhang: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, P. R. China.
  5. Qingbin Li: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, P. R. China.
  6. Jing Chen: Institute of Fisheries, Anhui Academy of Agricultural Sciences, Hefei, 230031, P. R. China.

Abstract

The red swamp crayfish (Procambarus clarkii) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive species in the world. This invasive species was dispersed most via human activities including intentional or unintentional carry in China. Thus, P. clarkii naturally distributed in China provides us a desirable mode to investigate the genetic structure of an invasive species dispersed mainly by human-mediated factors. To reveal the impact of human-mediated dispersal on genetic structure of P. clarkii in China, a total of 22,043 genome-wide SNPs were obtained from approximately 7.4 billion raw reads using 2b-RAD technique in this study. An evident pattern of population genetic structure and the asymmetrical migrational rates between different regions were observed with 22 populations based on these SNPs. This study provide a better understanding of the population genetic structure and demographic history of P. clarkii populations in China, inferring that anthropogenic factors (aquaculture or by accident) and ecological factors (e.g., complicated topography and climatic environment), as well as its special biological traits could account for the current population structure pattern and dispersal history of P. clarkii.

References

  1. Mol Ecol Resour. 2008 Jul;8(4):796-8 [PMID: 21585894]
  2. Science. 2001 Oct 12;294(5541):321-6 [PMID: 11598291]
  3. Genetics. 2010 May;185(1):313-26 [PMID: 20176979]
  4. Am J Hum Genet. 2011 Jan 7;88(1):76-82 [PMID: 21167468]
  5. Mol Ecol. 2008 Jan;17(1):431-49 [PMID: 17908213]
  6. PLoS One. 2013 Nov 21;8(11):e79960 [PMID: 24278224]
  7. Genet Mol Res. 2013 Mar 13;12(1):791-800 [PMID: 23546963]
  8. BMC Genet. 2005 Mar 11;6:13 [PMID: 15760479]
  9. Genetics. 2000 Jun;155(2):945-59 [PMID: 10835412]
  10. Nat Commun. 2017 Jan 27;8:14315 [PMID: 28128215]
  11. Proc Biol Sci. 2017 Jul 12;284(1858): [PMID: 28679729]
  12. PLoS One. 2012;7(7):e40652 [PMID: 22808222]
  13. Genet Mol Res. 2016 Nov 21;15(4): [PMID: 27886336]
  14. Int J Biol Sci. 2010 Feb 17;6(1):107-15 [PMID: 20186292]
  15. Nature. 2004 Sep 9;431(7005):177-81 [PMID: 15356629]
  16. J Egypt Soc Parasitol. 2013 Apr;43(1):71-86 [PMID: 23697017]
  17. Indian J Exp Biol. 2011 Dec;49(12):953-7 [PMID: 22403870]
  18. Genomics. 2016 Jul;108(1):3-10 [PMID: 26835965]
  19. Mar Genomics. 2016 Feb;25:43-48 [PMID: 26711352]
  20. Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):3883-8 [PMID: 17360447]
  21. Sci Rep. 2016 Jun 10;6:26780 [PMID: 27283359]
  22. Nat Methods. 2012 May 20;9(8):808-10 [PMID: 22609625]
  23. Evol Bioinform Online. 2007 Feb 23;1:47-50 [PMID: 19325852]
  24. G3 (Bethesda). 2017 Aug 7;7(8):2473-2487 [PMID: 28600439]
  25. Mol Ecol. 2016 Apr;25(7):1566-80 [PMID: 26857348]
  26. Mol Biol Evol. 2013 Dec;30(12):2725-9 [PMID: 24132122]
  27. Trends Plant Sci. 2008 Jun;13(6):288-94 [PMID: 18467157]
  28. Int J Biol Sci. 2008 Aug 28;4(5):279-82 [PMID: 18781225]
  29. Sci Rep. 2016 Jan 12;6:19244 [PMID: 26754638]
  30. Oecologia. 1991 Sep;88(1):84-90 [PMID: 28312735]
  31. Int J Mol Sci. 2015 Jun 29;16(7):14623-39 [PMID: 26132567]

MeSH Term

Animals
Astacoidea
China
Gene Flow
Genetic Loci
Genetics, Population
Polymorphism, Single Nucleotide

Word Cloud

Created with Highcharts 10.0.0clarkiiChinastructurespeciesPgeneticinvasivefactorspopulationredswampcrayfishProcambarusdispersedhuman-mediateddispersal22SNPsstudypatternpopulationshistoryoneeconomicallyimportantfarmedaquaticHoweveralsofamousworldviahumanactivitiesincludingintentionalunintentionalcarryThusnaturallydistributedprovidesusdesirablemodeinvestigatemainlyrevealimpacttotal043genome-wideobtainedapproximately74billionrawreadsusing2b-RADtechniqueevidentasymmetricalmigrationalratesdifferentregionsobservedbasedprovidebetterunderstandingdemographicinferringanthropogenicaquacultureaccidentecologicalegcomplicatedtopographyclimaticenvironmentwellspecialbiologicaltraitsaccountcurrentCharacterizationPopulationGeneticStructure

Similar Articles

Cited By (15)