LNCipedia 5: towards a reference set of human long non-coding RNAs.

Pieter-Jan Volders, Jasper Anckaert, Kenneth Verheggen, Justine Nuytens, Lennart Martens, Pieter Mestdagh, Jo Vandesompele
Author Information
  1. Pieter-Jan Volders: Cancer Research Institute Ghent (CRIG), 9000 Ghent, Belgium.
  2. Jasper Anckaert: Cancer Research Institute Ghent (CRIG), 9000 Ghent, Belgium.
  3. Kenneth Verheggen: VIB-UGent Center for Medical Biotechnology, 9000 Ghent, Belgium.
  4. Justine Nuytens: Cancer Research Institute Ghent (CRIG), 9000 Ghent, Belgium.
  5. Lennart Martens: VIB-UGent Center for Medical Biotechnology, 9000 Ghent, Belgium.
  6. Pieter Mestdagh: Cancer Research Institute Ghent (CRIG), 9000 Ghent, Belgium.
  7. Jo Vandesompele: Cancer Research Institute Ghent (CRIG), 9000 Ghent, Belgium.

Abstract

While long non-coding RNA (lncRNA) research in the past has primarily focused on the discovery of novel genes, today it has shifted towards functional annotation of this large class of genes. With thousands of lncRNA studies published every year, the current challenge lies in keeping track of which lncRNAs are functionally described. This is further complicated by the fact that lncRNA nomenclature is not straightforward and lncRNA annotation is scattered across different resources with their own quality metrics and definition of a lncRNA. To overcome this issue, large scale curation and annotation is needed. Here, we present the fifth release of the human lncRNA database LNCipedia (https://lncipedia.org). The most notable improvements include manual literature curation of 2482 lncRNA articles and the use of official gene symbols when available. In addition, an improved filtering pipeline results in a higher quality reference lncRNA gene set.

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MeSH Term

Computational Biology
Databases, Nucleic Acid
Genomics
Humans
Molecular Sequence Annotation
RNA, Long Noncoding
Web Browser

Chemicals

RNA, Long Noncoding

Links to CNCB-NGDC Resources

Database Commons: DBC000024 (LNCipedia)

Word Cloud

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