Septic patients in the intensive care unit present different nasal microbiotas.

Xi-Lan Tan, Hai-Yue Liu, Jun Long, Zhaofang Jiang, Yuemei Luo, Xin Zhao, Shumin Cai, Xiaozhu Zhong, Zhongran Cen, Jin Su, Hongwei Zhou
Author Information
  1. Xi-Lan Tan: Department of Environmental Health, School of Public Health, Southern Medical University, Guangzhou, PR China.
  2. Hai-Yue Liu: State Key Laboratory of Organ Failure Research, Division of Laboratory Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, PR China.
  3. Jun Long: State Key Laboratory of Organ Failure Research, Division of Laboratory Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, PR China.
  4. Zhaofang Jiang: State Key Laboratory of Organ Failure Research, Division of Laboratory Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, PR China.
  5. Yuemei Luo: Department of Environmental Health, School of Public Health, Southern Medical University, Guangzhou, PR China.
  6. Xin Zhao: State Key Laboratory of Organ Failure Research, Division of Laboratory Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, PR China.
  7. Shumin Cai: Department of Intensive Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, PR China.
  8. Xiaozhu Zhong: Division of Infection Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, PR China.
  9. Zhongran Cen: Division of Intensive Care Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, PR China.
  10. Jin Su: Chronic Airways Diseases Laboratory, Department of Respiratory & Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, PR China.
  11. Hongwei Zhou: Department of Environmental Health, School of Public Health, Southern Medical University, Guangzhou, PR China.

Abstract

AIM: The primary objective of this study was to evaluate correlations among mortality, intensive care unit (ICU) length of stay and airway microbiotas in septic patients.
MATERIALS & METHODS: A deep-sequencing analysis of the 16S rRNA gene V4 region was performed.
RESULTS: The nasal microbiota in septic patients was dominated by three nasal bacterial types (Corynebacterium, Staphylococcus and Acinetobacter). The Acinetobacter type was associated with the lowest diversity and longest length of stay (median: 9 days), and the Corynebacterium type was associated with the shortest length of stay. We found that the Acinetobacter type in the >9-day group was associated with the highest mortality (33%).
CONCLUSION: Septic patients have three nasal microbiota types, and the nasal microbiota is related to the length of stay and mortality.

Keywords

References

  1. Crit Care Med. 2012 Jul;40(7):2016-21 [PMID: 22584765]
  2. Lancet Respir Med. 2016 Jan;4(1):59-72 [PMID: 26700442]
  3. J Patient Saf. 2017 Dec;13(4):207-210 [PMID: 25162207]
  4. Lancet Infect Dis. 2017 Jun;17(6):661-670 [PMID: 28268067]
  5. Nat Med. 2018 Oct;24(10):1532-1535 [PMID: 30150716]
  6. Srp Arh Celok Lek. 2011 Jul-Aug;139(7-8):476-80 [PMID: 21980657]
  7. N Engl J Med. 2003 Apr 17;348(16):1546-54 [PMID: 12700374]
  8. Zhonghua Yi Xue Za Zhi. 2012 Apr 10;92(14):960-3 [PMID: 22781568]
  9. Lancet Infect Dis. 2017 Nov;17(11):1180-1189 [PMID: 28826588]
  10. mBio. 2015 Mar 03;6(2):e00037 [PMID: 25736890]
  11. Microb Ecol. 2015 Feb;69(2):407-14 [PMID: 25230887]
  12. Nat Microbiol. 2016 Jul 18;1(10):16113 [PMID: 27670109]
  13. Microbiome. 2017 Jul 12;5(1):75 [PMID: 28701177]
  14. Crit Care Med. 2017 Jul;45(7):1168-1176 [PMID: 28422777]
  15. Biomed Res Int. 2016;2016:7240864 [PMID: 26981536]
  16. J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):1947-58 [PMID: 14632445]
  17. J Arthroplasty. 2018 May;33(5):1530-1533 [PMID: 29395724]
  18. PLoS One. 2012;7(9):e45001 [PMID: 23049765]
  19. Biol Res Nurs. 2019 Mar;21(2):190-197 [PMID: 30537857]
  20. JAMA. 2016 Feb 23;315(8):801-10 [PMID: 26903338]
  21. Emerg (Tehran). 2017;5(1):e26 [PMID: 28286833]
  22. Curr Allergy Asthma Rep. 2014 Dec;14(12):485 [PMID: 25342392]
  23. mSphere. 2016 Aug 31;1(4): [PMID: 27602409]
  24. Am J Infect Control. 2017 Jul 1;45(7):723-727 [PMID: 28284750]
  25. Nat Rev Microbiol. 2017 May;15(5):259-270 [PMID: 28316330]
  26. Thorax. 2014 Jul;69(7):673-4 [PMID: 24287164]
  27. Nat Microbiol. 2018 Jan;3(1):8-16 [PMID: 29255284]
  28. Crit Care Med. 2017 Feb;45(2):337-347 [PMID: 28098630]
  29. Microbiome. 2018 Jan 03;6(1):2 [PMID: 29298732]
  30. BMC Med Res Methodol. 2016 Sep 01;16(1):116 [PMID: 27586677]
  31. Science. 2011 Oct 7;334(6052):105-8 [PMID: 21885731]
  32. J Med Case Rep. 2017 Feb 22;11(1):49 [PMID: 28222811]
  33. Front Microbiol. 2017 Jun 22;8:1163 [PMID: 28690603]
  34. J Intensive Care Med. 2017 May;32(4):264-272 [PMID: 26130580]
  35. Microbiome. 2016 Feb 11;4:7 [PMID: 26865050]
  36. Indian J Med Res. 2016 Sep;144(3):433-439 [PMID: 28139542]
  37. BMC Infect Dis. 2016 Jul 08;16:317 [PMID: 27391033]
  38. J Infect. 2015 Dec;71(6):649-57 [PMID: 26335708]
  39. ISME J. 2011 Feb;5(2):169-72 [PMID: 20827291]
  40. Pediatr Pulmonol. 2018 Apr;53(4):475-482 [PMID: 29405661]
  41. Front Med (Lausanne). 2017 Oct 30;4:183 [PMID: 29164118]
  42. Nature. 2011 May 12;473(7346):174-80 [PMID: 21508958]
  43. Infect Control Hosp Epidemiol. 2016 Apr;37(4):411-9 [PMID: 26880280]
  44. Clin Infect Dis. 2019 Jul 2;69(2):268-277 [PMID: 30329017]

MeSH Term

Adult
Bacteria
DNA, Bacterial
Female
High-Throughput Nucleotide Sequencing
Humans
Intensive Care Units
Male
Microbiota
Middle Aged
Nose
RNA, Ribosomal, 16S
Sepsis
Young Adult

Chemicals

DNA, Bacterial
RNA, Ribosomal, 16S