Identification of Diverse Integron and Plasmid Structures Carrying a Novel Carbapenemase Among Species.

Eleni Liapis, Maxime Bour, Pauline Triponney, Thomas Jové, Jean-Ralph Zahar, Benoît Valot, Katy Jeannot, Patrick Plésiat
Author Information
  1. Eleni Liapis: Centre National de Référence de la Résistance aux Antibiotiques, CHRU Jean Minjoz, Besançon, France.
  2. Maxime Bour: Centre National de Référence de la Résistance aux Antibiotiques, CHRU Jean Minjoz, Besançon, France.
  3. Pauline Triponney: Centre National de Référence de la Résistance aux Antibiotiques, CHRU Jean Minjoz, Besançon, France.
  4. Thomas Jové: INSERM UMR 1092, Université de Limoges, CHU Limoges, Limoges, France.
  5. Jean-Ralph Zahar: Département de Microbiologie Clinique, AP-HP, CHU Avicenne, Bobigny, France.
  6. Benoît Valot: CNRS, UMR 6249 Chrono-Environnement, Besançon, France.
  7. Katy Jeannot: Centre National de Référence de la Résistance aux Antibiotiques, CHRU Jean Minjoz, Besançon, France.
  8. Patrick Plésiat: Centre National de Référence de la Résistance aux Antibiotiques, CHRU Jean Minjoz, Besançon, France.

Abstract

A novel carbapenem-hydrolyzing beta-lactamase, called IMP-63, was identified in three clonally distinct strains of and two strains of isolated within a 4 year timeframe in three French hospitals. The gene that encodes this carbapenemase turned out to be located in the variable region of four integrons (In, In, In, and In) and to coexist with novel or rare gene cassettes (, , ) and insertion elements (IS, IS). All these integrons except one (In) were flanked by a copy of insertion sequence IS next to the putative gene, and were carried by non-conjugative plasmids (pNECK1, pROUSS1, pROUSS2, pROUE1). These plasmids exhibit unique modular structures and partial sequence homologies with plasmids previously identified in various non-fermenting environmental Gram-negative species. Lines of evidence suggest that IS promoted the transposition of IMP-63-encoding integrons on these different plasmids. As demonstrated by genotyping experiments, isolates of harboring the 28.9-kb plasmid pNECK1 and belonging to international "high-risk" clone ST308 were responsible for an outbreak in one hospital. Collectively, these data provide an insight into the complex and unpredictable routes of diffusion of some resistance determinants, here , among species.

Keywords

References

  1. FEMS Microbiol Lett. 2000 Jan 15;182(2):265-9 [PMID: 10620677]
  2. Antimicrob Agents Chemother. 2001 Feb;45(2):447-53 [PMID: 11158739]
  3. Antimicrob Agents Chemother. 2001 Aug;45(8):2224-8 [PMID: 11451678]
  4. J Antimicrob Chemother. 2001 Nov;48(5):717-21 [PMID: 11679562]
  5. Antimicrob Agents Chemother. 2002 Apr;46(4):1053-8 [PMID: 11897589]
  6. Antimicrob Agents Chemother. 2003 Feb;47(2):697-703 [PMID: 12543680]
  7. Antimicrob Agents Chemother. 2003 May;47(5):1522-8 [PMID: 12709317]
  8. J Clin Microbiol. 2003 Sep;41(9):4246-51 [PMID: 12958252]
  9. J Clin Microbiol. 2003 Dec;41(12):5407-13 [PMID: 14662918]
  10. J Bacteriol. 2004 Jan;186(2):518-34 [PMID: 14702321]
  11. FEMS Microbiol Lett. 1992 Dec 15;100(1-3):461-7 [PMID: 1478476]
  12. J Bacteriol. 1992 May;174(10):3196-203 [PMID: 1577689]
  13. Appl Microbiol Biotechnol. 2006 Jun;71(1):67-74 [PMID: 16244860]
  14. J Clin Microbiol. 2007 Oct;45(10):3175-83 [PMID: 17699654]
  15. J Clin Microbiol. 2009 Dec;47(12):4096-101 [PMID: 19828746]
  16. PLoS Genet. 2010 Jan;6(1):e1000793 [PMID: 20066027]
  17. J Antimicrob Chemother. 2010 Mar;65(3):474-8 [PMID: 20071364]
  18. Antimicrob Agents Chemother. 2010 Aug;54(8):3512-5 [PMID: 20547814]
  19. J Infect Dev Ctries. 2010 Jun 30;4(6):412-6 [PMID: 20601796]
  20. Front Microbiol. 2012 Jan 18;3:2 [PMID: 22279444]
  21. PLoS Pathog. 2012;8(6):e1002778 [PMID: 22719259]
  22. J Antimicrob Chemother. 2013 May;68(5):1060-5 [PMID: 23354281]
  23. Clin Microbiol Infect. 2013 Sep;19(9):E424-7 [PMID: 23656535]
  24. J Antimicrob Chemother. 2014 Jan;69(1):67-71 [PMID: 23928025]
  25. PLoS One. 2014 Jan 17;9(1):e81604 [PMID: 24465371]
  26. Plasmid. 2015 Mar;78:4-16 [PMID: 25108234]
  27. PLoS One. 2014 Aug 14;9(8):e105010 [PMID: 25121765]
  28. Nucleic Acids Res. 1989 Dec 25;17(24):10509 [PMID: 2513561]
  29. Front Microbiol. 2015 Mar 18;6:214 [PMID: 26074881]
  30. Drug Resist Updat. 2015 Jul-Aug;21-22:41-59 [PMID: 26304792]
  31. Emerg Infect Dis. 2017 Feb;23(2):304-307 [PMID: 28098548]
  32. Antimicrob Agents Chemother. 2017 Apr 24;61(5): [PMID: 28193652]
  33. Genome Res. 2017 Apr;27(4):650-662 [PMID: 28325850]
  34. Antimicrob Agents Chemother. 2017 Oct 24;61(11): [PMID: 28874376]
  35. Front Med (Lausanne). 2017 Oct 30;4:183 [PMID: 29164118]
  36. Genet Res. 1968 Aug;12(1):29-36 [PMID: 4976996]
  37. Plasmid. 1984 Jul;12(1):19-36 [PMID: 6387733]
  38. Antimicrob Agents Chemother. 1994 Jan;38(1):71-8 [PMID: 8141584]
  39. J Formos Med Assoc. 1996 Oct;95(10):754-61 [PMID: 8961672]
  40. Antimicrob Agents Chemother. 1998 Dec;42(12):3113-6 [PMID: 9835500]

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