Transcriptome Profile Analysis of Mammary Gland Tissue from Two Breeds of Lactating Sheep.

Zhiyun Hao, Huitong Zhou, Jon G H Hickford, Hua Gong, Jiqing Wang, Jiang Hu, Xiu Liu, Shaobin Li, Mengli Zhao, Yuzhu Luo
Author Information
  1. Zhiyun Hao: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. haozy2018@163.com.
  2. Huitong Zhou: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. huitong.zhou@lincoln.ac.nz.
  3. Jon G H Hickford: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. Jon.hickford@lincoln.ac.nz.
  4. Hua Gong: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. hua.gong@lincoln.ac.nz.
  5. Jiqing Wang: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. wangjq@gsau.edu.cn.
  6. Jiang Hu: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. huj@gsau.edu.cn.
  7. Xiu Liu: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. liux@gsau.edu.cn.
  8. Shaobin Li: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. lisb@gsau.edu.cn.
  9. Mengli Zhao: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. 18394187234@163.com.
  10. Yuzhu Luo: Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China. luoyz@gsau.edu.cn.

Abstract

The mammary gland is a crucial tissue for milk synthesis and plays a critical role in the feeding and growth of mammalian offspring. The aim of this study was to use RNA-sequencing (RNA-Seq) technology to provide a transcriptome profile of the ovine mammary gland at the peak of lactation. Small-Tailed Han (STH) Sheep ( = 9) and Gansu Alpine Merino (GAM) Sheep ( = 9), breeds with phenotypic differences in milk production traits, were selected for the RNA-Seq analysis. This revealed 74 genes that were more highly expressed in the STHs than in the GAMs. Similarly, 143 genes that were expressed at lower levels in the STHs than in the GAMs, were identified. Gene ontogeny (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses revealed that these differentially expressed genes (DEGs) were associated with binding and catalytic activities, hematopoietic cell lineages, oxytocin signaling pathway and neuroactive ligand-receptor interaction. This is the first study of the transcriptome profile of the ovine mammary gland in these Chinese breeds at peak lactation. The results provide for a better understanding of the genetic mechanisms involved in ovine lactation.

Keywords

References

  1. BMC Vet Res. 2016 Nov 25;12(1):264 [PMID: 27884183]
  2. J Dairy Sci. 2017 Dec;100(12):10332-10352 [PMID: 29153168]
  3. Front Immunol. 2012 Jan 11;2:96 [PMID: 22566885]
  4. BMC Genomics. 2015 Oct 05;16:748 [PMID: 26437771]
  5. Nat Biotechnol. 2010 May;28(5):511-5 [PMID: 20436464]
  6. Wiley Interdiscip Rev Dev Biol. 2012 Jul-Aug;1(4):533-57 [PMID: 22844349]
  7. Plant Cell Physiol. 2013 Apr;54(4):492-505 [PMID: 23324171]
  8. Genome Biol. 2014;15(12):550 [PMID: 25516281]
  9. PLoS One. 2016 Nov 10;11(11):e0166374 [PMID: 27832155]
  10. Sci Rep. 2014 Jul 08;4:5297 [PMID: 25001089]
  11. Sci Rep. 2015 Dec 18;5:18399 [PMID: 26677795]
  12. BMC Genomics. 2017 Feb 15;18(1):170 [PMID: 28202015]
  13. DNA Cell Biol. 2019 Feb;38(2):129-143 [PMID: 30726149]
  14. Nature. 2012 Nov 29;491(7426):711-6 [PMID: 23075845]
  15. Sci Data. 2016 Jul 05;3:160051 [PMID: 27377755]
  16. BMC Genomics. 2012 Jan 25;13:45 [PMID: 22276848]
  17. Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9581-6 [PMID: 27506794]
  18. BMC Genomics. 2014 Mar 24;15:226 [PMID: 24655368]
  19. Physiol Genomics. 2014 Aug 1;46(15):560-70 [PMID: 24893875]
  20. Hum Genet. 2004 Jun;115(1):81-9 [PMID: 15088139]
  21. Breast Cancer Res. 2004;6(6):R605-15 [PMID: 15535842]
  22. Bioinformatics. 2010 Jan 1;26(1):136-8 [PMID: 19855105]
  23. Nat Methods. 2008 Jul;5(7):621-8 [PMID: 18516045]
  24. BMC Genomics. 2013 Dec 12;14:872 [PMID: 24330573]
  25. PLoS One. 2018 Jul 30;13(7):e0201628 [PMID: 30059556]
  26. BMC Med Genet. 2007 Sep 19;8 Suppl 1:S8 [PMID: 17903307]
  27. J Dairy Sci. 2017 Jan;100(1):385-394 [PMID: 28341048]
  28. PLoS One. 2013 Jul 05;8(7):e67531 [PMID: 23861770]
  29. Development. 2007 Nov;134(21):3929-39 [PMID: 17898001]

MeSH Term

Animals
Breeding
Female
Gene Expression Profiling
Lactation
Mammary Glands, Animal
Phenotype
Sequence Analysis, RNA
Sheep
Transcriptome

Word Cloud

Created with Highcharts 10.0.0mammaryglandexpressedRNA-Seqovinelactationsheepgenesmilkstudyprovidetranscriptomeprofilepeak=9breedsrevealedSTHsGAMsdifferentiallycrucialtissuesynthesisplayscriticalrolefeedinggrowthmammalianoffspringaimuseRNA-sequencingtechnologySmall-TailedHanSTHGansuAlpineMerinoGAMphenotypicdifferencesproductiontraitsselectedanalysis74highlySimilarly143lowerlevelsidentifiedGeneontogenyGOKyotoEncyclopediaGenesGenomesKEGGenrichmentanalysesDEGsassociatedbindingcatalyticactivitieshematopoieticcelllineagesoxytocinsignalingpathwayneuroactiveligand-receptorinteractionfirstChineseresultsbetterunderstandinggeneticmechanismsinvolvedTranscriptomeProfileAnalysisMammaryGlandTissueTwoBreedsLactatingSheepgene

Similar Articles

Cited By (11)