TeachOpenCADD-KNIME: A Teaching Platform for Computer-Aided Drug Design Using KNIME Workflows.

Dominique Sydow, Michele Wichmann, Jaime Rodríguez-Guerra, Daria Goldmann, Gregory Landrum, Andrea Volkamer
Author Information
  1. Dominique Sydow: In Silico Toxicology, Institute of Physiology , Charité - Universitätsmedizin Berlin , Charitéplatz 1 , 10117 Berlin , Germany. ORCID
  2. Michele Wichmann: In Silico Toxicology, Institute of Physiology , Charité - Universitätsmedizin Berlin , Charitéplatz 1 , 10117 Berlin , Germany. ORCID
  3. Jaime Rodríguez-Guerra: In Silico Toxicology, Institute of Physiology , Charité - Universitätsmedizin Berlin , Charitéplatz 1 , 10117 Berlin , Germany. ORCID
  4. Daria Goldmann: KNIME GmbH , Körtestr. 10 , 10967 Berlin , Germany. ORCID
  5. Gregory Landrum: KNIME AG , Technoparkstr. 1 , 8005 Zurich , Switzerland. ORCID
  6. Andrea Volkamer: In Silico Toxicology, Institute of Physiology , Charité - Universitätsmedizin Berlin , Charitéplatz 1 , 10117 Berlin , Germany. ORCID

Abstract

Open-source workflows have become more and more an integral part of computer-aided drug design (CADD) projects since they allow reproducible and shareable research that can be easily transferred to other projects. Setting up, understanding, and applying such workflows involves either coding or using workflow managers that offer a graphical user interface. We previously reported the TeachOpenCADD teaching platform that provides interactive Jupyter Notebooks (talktorials) on central CADD topics using open-source data and Python packages. Here we present the conversion of these talktorials to KNIME workflows that allow users to explore our teaching material without any line of code. TeachOpenCADD KNIME workflows are freely available on the KNIME Hub: https://hub.knime.com/volkamerlab/space/TeachOpenCADD .

MeSH Term

Computer Simulation
Drug Design
Models, Chemical
Software
Workflow

Word Cloud

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