Validation of Suitable Reference Genes for Gene Expression Studies on Yak Testis Development.

Xuelan Zhou, Xiaoyun Wu, Min Chu, Chunnian Liang, Xuezhi Ding, Jie Pei, Lin Xiong, Pengjia Bao, Xian Guo, Ping Yan
Author Information
  1. Xuelan Zhou: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
  2. Xiaoyun Wu: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
  3. Min Chu: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
  4. Chunnian Liang: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
  5. Xuezhi Ding: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
  6. Jie Pei: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
  7. Lin Xiong: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
  8. Pengjia Bao: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
  9. Xian Guo: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
  10. Ping Yan: Key Laboratory of Yak Breeding Engineering, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.

Abstract

Testis has an important function in male reproduction. Its development is regulated by a large number of genes. The real-time reserve transcriptase-quantitative polymerase chain reaction (RT-qPCR) is a useful tool to evaluate the gene expression levels. However, unsuitable reference genes (RGs) can cause the misinterpretation of gene expression levels. Unfortunately, the ideal RGs for yak testis development are yet to be studied. In this study, 13 commonly used RGs were selected to identify the most stable RGs in yak testis at four different developmental stages, including two immature stages (6 months and 18 months) and two mature stages (30 months and 6 years). This study used GeNorm, NormFinder, BestKeeper, ∆, and RefFinder programs to evaluate the stability of 13 candidate genes. The results of RefFinder showed that the stabilities of TATA box-binding protein () and ubiquitously expressed transcript protein () were ranked the top two across all developmental stages. and hydroxymethylbilane synthase () were stably expressed in immature stages, while mitochondrial ribosomal protein L39 () and had higher stability than other candidate genes in mature stages. This study provided valuable information for gene expression studies to assist further investigation on the molecular mechanisms in underlying yak testis development.

Keywords

References

  1. Mol Biol Cell. 2005 Dec;16(12):5857-65 [PMID: 16221885]
  2. Mol Genet Genomics. 2014 Dec;289(6):1157-69 [PMID: 24952483]
  3. Med Oncol. 2013 Mar;30(1):368 [PMID: 23292864]
  4. Mol Cell Endocrinol. 2018 Jun 15;468:47-59 [PMID: 29501799]
  5. PLoS One. 2013;8(3):e58751 [PMID: 23516551]
  6. Mol Hum Reprod. 2011 Oct;17(10):620-5 [PMID: 21527436]
  7. Theriogenology. 2017 Apr 1;92:6-13 [PMID: 28237344]
  8. Theriogenology. 2015 Feb;83(3):394-398.e1 [PMID: 25459426]
  9. Biol Reprod. 2019 Apr 1;100(4):950-962 [PMID: 30423030]
  10. PLoS One. 2016 Jan 25;11(1):e0147705 [PMID: 26808329]
  11. Lipids. 2017 Nov;52(11):951-960 [PMID: 28965254]
  12. Animals (Basel). 2019 Nov 10;9(11): [PMID: 31717620]
  13. Cancer Res. 2004 Aug 1;64(15):5245-50 [PMID: 15289330]
  14. Genome Biol. 2002 Jun 18;3(7):RESEARCH0034 [PMID: 12184808]
  15. Nat Commun. 2013;4:1995 [PMID: 23759713]
  16. Anal Biochem. 2005 Sep 1;344(1):141-3 [PMID: 16054107]
  17. Reprod Fertil Dev. 2018 Jan;30(2):349-358 [PMID: 28727982]
  18. Hum Reprod. 2016 Jul;31(7):1411-24 [PMID: 27141042]
  19. Plant Mol Biol. 2012 Jan 31;: [PMID: 22290409]
  20. Sex Dev. 2009;3(4):194-204 [PMID: 19752599]
  21. Biotechniques. 2004 Jul;37(1):112-4, 116, 118-9 [PMID: 15283208]
  22. J Dairy Sci. 2014 Feb;97(2):902-10 [PMID: 24342693]
  23. Vet Immunol Immunopathol. 2007 May 15;117(1-2):55-66 [PMID: 17346803]
  24. Thorax. 2002 Sep;57(9):765-70 [PMID: 12200519]
  25. Sci Rep. 2018 Jun 13;8(1):9001 [PMID: 29899556]
  26. Genes Dev. 1993 Jul;7(7B):1291-308 [PMID: 8330735]
  27. Reprod Domest Anim. 2014 Dec;49(6):970-6 [PMID: 25263304]
  28. Genes Immun. 2005 Jun;6(4):279-84 [PMID: 15815687]
  29. Biotechnol Lett. 2004 Mar;26(6):509-15 [PMID: 15127793]
  30. PLoS Comput Biol. 2009 Dec;5(12):e1000598 [PMID: 20011106]
  31. PLoS One. 2012;7(8):e41659 [PMID: 22927912]
  32. Nat Rev Genet. 2010 Feb;11(2):124-36 [PMID: 20051984]
  33. Methods. 2001 Dec;25(4):402-8 [PMID: 11846609]
  34. J Dairy Sci. 2008 Aug;91(8):3057-66 [PMID: 18650282]
  35. Sci Rep. 2017 Jan 25;7:40290 [PMID: 28120870]
  36. J Biotechnol. 2005 May 4;117(2):163-71 [PMID: 15823405]
  37. Biochem Biophys Res Commun. 2004 Jan 23;313(4):856-62 [PMID: 14706621]
  38. Int J Mol Sci. 2018 Oct 09;19(10): [PMID: 30304826]
  39. BMC Mol Biol. 2006 Oct 06;7:33 [PMID: 17026756]

Grants

  1. CAAS-ASTIP-2014-LIHPS-01/Agricultural Science and Technology Innovation Program
  2. CARS-37/National Beef Cattle Industry Technology & System
  3. GNSW-2015-27/Application Development Project in Gansu Province

Word Cloud

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