Assembly and Genome-Wide SNP Discovery in Rohu Carp, .

Paramananda Das, Lakshman Sahoo, Sofia P Das, Amrita Bit, Chaitanya G Joshi, Basdeo Kushwaha, Dinesh Kumar, Tejas M Shah, Ankit T Hinsu, Namrata Patel, Siddhi Patnaik, Suyash Agarwal, Manmohan Pandey, Shreya Srivastava, Prem Kumar Meher, Pallipuram Jayasankar, Prakash G Koringa, Naresh S Nagpure, Ravindra Kumar, Mahender Singh, Mir Asif Iquebal, Sarika Jaiswal, Neeraj Kumar, Mustafa Raza, Kanta Das Mahapatra, Joykrushna Jena
Author Information
  1. Paramananda Das: Fish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Bhubaneswar, India.
  2. Lakshman Sahoo: Fish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Bhubaneswar, India.
  3. Sofia P Das: Fish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Bhubaneswar, India.
  4. Amrita Bit: Fish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Bhubaneswar, India.
  5. Chaitanya G Joshi: Department of Animal Biotechnology, Anand Agricultural University, Anand, India.
  6. Basdeo Kushwaha: Molecular Biology and Biotechnology Division, ICAR-National Bureau of Fish Genetic Resources, Lucknow, India.
  7. Dinesh Kumar: Center for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India.
  8. Tejas M Shah: Department of Animal Biotechnology, Anand Agricultural University, Anand, India.
  9. Ankit T Hinsu: Department of Animal Biotechnology, Anand Agricultural University, Anand, India.
  10. Namrata Patel: Department of Animal Biotechnology, Anand Agricultural University, Anand, India.
  11. Siddhi Patnaik: Fish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Bhubaneswar, India.
  12. Suyash Agarwal: Molecular Biology and Biotechnology Division, ICAR-National Bureau of Fish Genetic Resources, Lucknow, India.
  13. Manmohan Pandey: Molecular Biology and Biotechnology Division, ICAR-National Bureau of Fish Genetic Resources, Lucknow, India.
  14. Shreya Srivastava: Molecular Biology and Biotechnology Division, ICAR-National Bureau of Fish Genetic Resources, Lucknow, India.
  15. Prem Kumar Meher: Fish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Bhubaneswar, India.
  16. Pallipuram Jayasankar: Fish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Bhubaneswar, India.
  17. Prakash G Koringa: Department of Animal Biotechnology, Anand Agricultural University, Anand, India.
  18. Naresh S Nagpure: Molecular Biology and Biotechnology Division, ICAR-National Bureau of Fish Genetic Resources, Lucknow, India.
  19. Ravindra Kumar: Molecular Biology and Biotechnology Division, ICAR-National Bureau of Fish Genetic Resources, Lucknow, India.
  20. Mahender Singh: Molecular Biology and Biotechnology Division, ICAR-National Bureau of Fish Genetic Resources, Lucknow, India.
  21. Mir Asif Iquebal: Center for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India.
  22. Sarika Jaiswal: Center for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India.
  23. Neeraj Kumar: Center for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India.
  24. Mustafa Raza: Center for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India.
  25. Kanta Das Mahapatra: Fish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Bhubaneswar, India.
  26. Joykrushna Jena: Division of Fisheries, Krishi Anusandhan Bhawan - II, New Delhi, India.

Abstract

No abstract text available.

Keywords

References

  1. Genome Res. 2002 Aug;12(8):1269-76 [PMID: 12176934]
  2. BMC Bioinformatics. 2011 Apr 28;12:124 [PMID: 21526987]
  3. Bioinformatics. 2011 Feb 15;27(4):578-9 [PMID: 21149342]
  4. Anim Genet. 2009 Apr;40(2):253-4 [PMID: 19220228]
  5. Mol Ecol Resour. 2015 May;15(3):662-72 [PMID: 25294387]
  6. J Anim Breed Genet. 2018 Jun 5;: [PMID: 29869355]
  7. Genome Res. 2017 May;27(5):722-736 [PMID: 28298431]
  8. Nucleic Acids Res. 2011 May;39(10):e68 [PMID: 21398631]
  9. Nat Commun. 2016 Jun 02;7:11757 [PMID: 27249958]
  10. J Genet. 2015 Jun;94(2):271-7 [PMID: 26174674]
  11. Theor Appl Genet. 2003 Feb;106(3):411-22 [PMID: 12589540]
  12. Nucleic Acids Res. 2004 Mar 19;32(5):1792-7 [PMID: 15034147]
  13. Science. 2000 Mar 24;287(5461):2196-204 [PMID: 10731133]
  14. Annu Rev Anim Biosci. 2018 Feb 15;6:47-68 [PMID: 29447475]
  15. 3 Biotech. 2016 Jun;6(1):68 [PMID: 28330138]
  16. BMC Genomics. 2014 Apr 24;15:307 [PMID: 24762296]
  17. Gigascience. 2012 Dec 27;1(1):18 [PMID: 23587118]
  18. BMC Genomics. 2014 Jun 30;15:541 [PMID: 24984705]
  19. Bioinformatics. 2013 Nov 1;29(21):2669-77 [PMID: 23990416]
  20. PLoS One. 2012;7(2):e30619 [PMID: 22312429]
  21. Mar Biotechnol (NY). 2012 Oct;14(5):620-33 [PMID: 22298294]
  22. Bioinformatics. 2014 May 1;30(9):1312-3 [PMID: 24451623]
  23. Nucleic Acids Res. 1997 Mar 1;25(5):955-64 [PMID: 9023104]
  24. Bioinformatics. 2005 Jun;21 Suppl 1:i351-8 [PMID: 15961478]
  25. Nucleic Acids Res. 2016 Nov 2;44(19):e147 [PMID: 27458204]
  26. Int J Genomics. 2018 Mar 28;2018:7984292 [PMID: 29785397]
  27. BMC Evol Biol. 2011 Jun 22;11:177 [PMID: 21693066]
  28. Nucleic Acids Res. 1999 Jan 15;27(2):573-80 [PMID: 9862982]
  29. Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25 [PMID: 14534192]
  30. Bioinformatics. 2015 Oct 1;31(19):3210-2 [PMID: 26059717]
  31. Front Genet. 2018 Dec 04;9:614 [PMID: 30564274]
  32. Nat Rev Genet. 2016 Jul 4;17(9):523-34 [PMID: 27376488]
  33. Nucleic Acids Res. 2015 Jul 1;43(W1):W78-84 [PMID: 25964301]
  34. Bioinformatics. 2005 Sep 15;21(18):3674-6 [PMID: 16081474]
  35. Gigascience. 2017 Jul 1;6(7):1-13 [PMID: 28535200]
  36. BMC Genomics. 2017 Jan 31;18(1):121 [PMID: 28143402]
  37. Nat Genet. 2014 Nov;46(11):1212-9 [PMID: 25240282]
  38. Gene. 2013 Jul 15;524(1):1-14 [PMID: 23583682]
  39. BMC Biol. 2016 Jan 04;14:1 [PMID: 26728391]
  40. Nature. 2013 Apr 25;496(7446):498-503 [PMID: 23594743]

Word Cloud

Created with Highcharts 10.0.0AssemblyGenome-WideSNPDiscoveryRohuCarpdenovoassemblydraftgenomeorthologousgenefamilyotophysanphylogeneticsrohucarpsynteny

Similar Articles

Cited By