The cross-talk between methylation and phosphorylation in lymphoid-specific helicase drives cancer stem-like properties.

Na Liu, Rui Yang, Ying Shi, Ling Chen, Yating Liu, Zuli Wang, Shouping Liu, Lianlian Ouyang, Haiyan Wang, Weiwei Lai, Chao Mao, Min Wang, Yan Cheng, Shuang Liu, Xiang Wang, Hu Zhou, Ya Cao, Desheng Xiao, Yongguang Tao
Author Information
  1. Na Liu: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  2. Rui Yang: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  3. Ying Shi: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  4. Ling Chen: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  5. Yating Liu: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  6. Zuli Wang: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  7. Shouping Liu: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  8. Lianlian Ouyang: Department of Oncology, Institute of Medical Sciences, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, 410008, Changsha, Hunan, China.
  9. Haiyan Wang: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  10. Weiwei Lai: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  11. Chao Mao: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  12. Min Wang: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  13. Yan Cheng: Xiangya School of Pharmaceutical Sciences, Central South University, 410078, Changsha, China.
  14. Shuang Liu: Department of Oncology, Institute of Medical Sciences, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, 410008, Changsha, Hunan, China.
  15. Xiang Wang: Hunan Key Laboratory of Tumor Models and Individualized Medicine; Hunan Key Laboratory of Early Diagnosis and Precision Therapy in Lung Cancer, Department of Thoracic Surgery, Second Xiangya Hospital, Central South University, 410011, Changsha, China.
  16. Hu Zhou: Shanghai Institute of Material Medical, Chinese Academy of Sciences (CAS), 555 Zuchongzhi Road, Zhangjiang Hi-Tech Park, 201203, Shanghai, China.
  17. Ya Cao: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China.
  18. Desheng Xiao: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China. xdsh96@21cn.com.
  19. Yongguang Tao: Department of Pathology, Key Laboratory of Carcinogenesis and Cancer Invasion (Ministry of Education), Xiangya Hospital; Central South University, 410078, Hunan, China. taoyong@csu.edu.cn.

Abstract

Posttranslational modifications (PTMs) of proteins, including chromatin modifiers, play crucial roles in the dynamic alteration of various protein properties and functions including stem-cell properties. However, the roles of Lymphoid-specific helicase (LSH), a DNA methylation modifier, in modulating stem-like properties in cancer are still not clearly clarified. Therefore, exploring PTMs modulation of LSH activity will be of great significance to further understand the function and activity of LSH. Here, we demonstrate that LSH is capable to undergo PTMs, including methylation and phosphorylation. The arginine methyltransferase PRMT5 can methylate LSH at R309 residue, meanwhile, LSH could as well be phosphorylated by MAPK1 kinase at S503 residue. We further show that the accumulation of phosphorylation of LSH at S503 site exhibits downregulation of LSH methylation at R309 residue, which eventually promoting stem-like properties in lung cancer. Whereas, phosphorylation-deficient LSH S503A mutant promotes the accumulation of LSH methylation at R309 residue and attenuates stem-like properties, indicating the critical roles of LSH PTMs in modulating stem-like properties. Thus, our study highlights the importance of the crosstalk between LSH PTMs in determining its activity and function in lung cancer stem-cell maintenance.

References

  1. Bray, F. et al. Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: A Cancer J. Clin. 68, 394–424 (2018).
  2. Reck, M. et al. Management of non-small-cell lung cancer: recent developments. Lancet (Lond. Engl.) 382, 709–719 (2013).
  3. Murat, A. et al. Stem cell-related “self-renewal” signature and high epidermal growth factor receptor expression associated with resistance to concomitant chemoradiotherapy in glioblastoma. J. Clin. Oncol. 26, 3015–3024 (2008). [PMID: 18565887]
  4. Zhang, S. et al. Ovarian cancer stem cells express ROR1, which can be targeted for anti-cancer-stem-cell therapy. Proc. Natl Acad. Sci. USA 111, 17266–17271 (2014). [PMID: 25411317]
  5. Eramo, A. et al. Identification and expansion of the tumorigenic lung cancer stem cell population. Cell Death Differ. 15, 504–514 (2008). [PMID: 18049477]
  6. Lytle, N. K., Barber, A. G. & Reya, T. Stem cell fate in cancer growth, progression and therapy resistance. Nat. Rev. Cancer 18, 669–680 (2018). [PMID: 30228301]
  7. Chen, W. J. et al. Cancer-associated fibroblasts regulate the plasticity of lung cancer stemness via paracrine signalling. Nat. Commun. 5, 3472 (2014). [PMID: 24668028]
  8. Wen, C. Z. et al. Glycine decarboxylase activity drives non-small cell lung cancer tumor-initiating cells and tumorigenesis. Cell. 148, 259–272 (2012).
  9. Gemma, L. et al. Cancer stem cells in drug resistant lung cancer: Targeting cell surface markers and signaling pathways. Pharmacol Ther. 158, 71–90 (2016).
  10. Geiman, T. M. et al. Lsh, a SNF2 family member, is required for normal murine development. Biochim. Biophys. Acta 1526, 211–220 (2001). [PMID: 11325543]
  11. Sun, L. Q. et al. Growth retardation and premature aging phenotypes in mice with disruption of the SNF2-like gene, PASG. Genes Dev. 18, 1035–1046 (2004). [PMID: 15105378]
  12. Thijssen, P. E. et al. Corrigendum: mutations in CDCA7 and HELLS cause immunodeficiency-centromeric instability-facial anomalies syndrome. Nat. Commun. 7, 12003 (2016). [PMID: 27328760]
  13. Muegge, K. Lsh, a guardian of heterochromatin at repeat elements. Biochem. Cell Biol. 83, 548–554 (2005). [PMID: 16094458]
  14. Unoki, M. et al. CDCA7 and HELLS mutations undermine nonhomologous end joining in centromeric instability syndrome. J. Clin. Invest. 129, 78–92 (2019). [PMID: 30307408]
  15. Mao, C. et al. A G3BP1-interacting lncRNA promotes ferroptosis and apoptosis in cancer via nuclear sequestration of p53. Cancer Res. 78, 3484–3496 (2018). [PMID: 29588351]
  16. He, X. et al. Chromatin remodeling factor LSH drives cancer progression by suppressing the activity of fumarate hydratase. Cancer Res. 76, 5743–5755 (2016). [PMID: 27302170]
  17. Jia, J. et al. Decrease in lymphoid specific helicase and 5-hydroxymethylcytosine is associated with metastasis and genome instability. Theranostics 7, 3920–3932 (2017). [PMID: 29109788]
  18. Jiang, Y. et al. EGLN1/c-Myc induced lymphoid-specific helicase inhibits ferroptosis through lipid metabolic gene expression changes. Theranostics 7, 3293–3305 (2017). [PMID: 28900510]
  19. Xiao, D. et al. Chromatin remodeling factor LSH is upregulated by the LRP6-GSK3beta-E2F1 axis linking reversely with survival in gliomas. Theranostics 7, 132–143 (2017). [PMID: 28042322]
  20. Yang, R. et al. LSH interacts with and stabilizes GINS4 transcript that promotes tumourigenesis in non-small cell lung cancer. J. Exp. Clin. Cancer Res. 38, 280 (2019). [PMID: 31253190]
  21. Yang, R. et al. GIAT4RA functions as a tumor suppressor in non-small cell lung cancer by counteracting Uchl3-mediated deubiquitination of LSH. Oncogene. 38, 7133–7145 (2019).
  22. Keyes, W. M. et al. DeltaNp63alpha is an oncogene that targets chromatin remodeler Lsh to drive skin stem cell proliferation and tumorigenesis. Cell Stem Cell 8, 164–176 (2011). [PMID: 21295273]
  23. Zhang, G. et al. Chromatin remodeler HELLS maintains glioma stem cells through E2F3 and MYC. JCI insight. 4, e126140 (2019).
  24. Zamaraev, A. V. et al. Post-translational modification of caspases: the other side of apoptosis regulation. Trends Cell Biol. 27, 322–339 (2017). [PMID: 28188028]
  25. Deribe, Y. L., Pawson, T. & Dikic, I. Post-translational modifications in signal integration. Nat. Struct. Mol. Biol. 17, 666–672 (2010). [PMID: 20495563]
  26. Guo, J. et al. AKT methylation by SETDB1 promotes AKT kinase activity and oncogenic functions. Nat. Cell Biol. 21, 226–237 (2019). [PMID: 30692625]
  27. Wang, G. et al. SETDB1-mediated methylation of Akt promotes its K63-linked ubiquitination and activation leading to tumorigenesis. Nat. Cell Biol. 21, 214–225 (2019). [PMID: 30692626]
  28. Li, W. et al. A methylation-phosphorylation switch determines Plk1 kinase activity and function in DNA damage repair. Sci. Adv. 5, eaau7566 (2019). [PMID: 30854428]
  29. Lee, H. et al. Melatonin disturbs SUMOylation-mediated crosstalk between c-Myc and nestin via MT1 activation and promotes the sensitivity of paclitaxel in brain cancer stem cells. J. Pineal Res. 65, e12496 (2018). [PMID: 29654697]
  30. Fang, L. et al. A methylation-phosphorylation switch determines Sox2 stability and function in ESC maintenance or differentiation. Mol. cell. 55, 537–551 (2014). [PMID: 25042802]
  31. Wang, Z. et al. AKT drives SOX2 overexpression and cancer cell stemness in esophageal cancer by protecting SOX2 from UBR5-mediated degradation. Oncogene 38, 5250–5264 (2019). [PMID: 30894683]
  32. Cho, Y. et al. Post-translational modification of OCT4 in breast cancer tumorigenesis. Cell Death Differ. 25, 1781–1795 (2018). [PMID: 29511337]
  33. Morales, Y., Caceres, T., May, K. & Hevel, J. M. Biochemistry and regulation of the protein arginine methyltransferases (PRMTs). Arch. Biochem. Biophysics 590, 138–152 (2016).
  34. Chang, B., Chen, Y., Zhao, Y. & Bruick, R. K. JMJD6 is a histone arginine demethylase. Science 318, 444–447 (2007). [PMID: 17947579]
  35. Yang, Y. & Bedford, M. T. Protein arginine methyltransferases and cancer. Nat. Rev. Cancer 13, 37–50 (2013). [PMID: 23235912]
  36. Jarrold, J. & Davies, C. C. PRMTs and arginine methylation: cancer’s best-kept secret? Trends Mol. Med. 25, 993–1009 (2019)
  37. Roworth, A. P. et al. Arginine methylation expands the regulatory mechanisms and extends the genomic landscape under E2F control. Sci. Adv. 5, eaaw4640 (2019). [PMID: 31249870]
  38. Lattouf, H. et al. LKB1 regulates PRMT5 activity in breast cancer. Int. J. Cancer 144, 595–606 (2019). [PMID: 30289978]
  39. Brady, D. C. et al. Copper is required for oncogenic BRAF signalling and tumorigenesis. Nature 509, 492–496 (2014). [PMID: 24717435]
  40. Cuijpers, S. A. G. & Vertegaal, A. C. O. Guiding mitotic progression by crosstalk between post-translational modifications. Trends Biochem. Sci. 43, 251–268 (2018). [PMID: 29486978]
  41. Huang, K. Y. et al. dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications. Nucleic Acids Res. 47, D298–d308 (2019). [PMID: 30418626]
  42. Vu, L. D., Gevaert, K. & De Smet, I. Protein language: post-translational modifications talking to each other. Trends Plant Sci. 23, 1068–1080 (2018). [PMID: 30279071]
  43. Ho, M. M., Ng, A. V., Lam, S. & Hung, J. Y. Side population in human lung cancer cell lines and tumors is enriched with stem-like cancer cells. Cancer Res. 67, 4827–4833 (2007). [PMID: 17510412]
  44. Voigt, P., Tee, W. W. & Reinberg, D. A double take on bivalent promoters. Genes Dev. 27, 1318–1338 (2013). [PMID: 23788621]
  45. Pan, G. et al. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1, 299–312 (2007). [PMID: 18371364]
  46. Harikumar, A. & Meshorer, E. Chromatin remodeling and bivalent histone modifications in embryonic stem cells. EMBO Rep. 16, 1609–1619 (2015). [PMID: 26553936]
  47. Yu, W. et al. Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways. Genome Res. 24, 1613–1623 (2014). [PMID: 25170028]
  48. Dean, M., Fojo, T. & Bates, S. Tumour stem cells and drug resistance. Nat. Rev. Cancer 5, 275–284 (2005). [PMID: 15803154]
  49. Narlikar, G. J., Sundaramoorthy, R. & Owen-Hughes, T. Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes. Cell 154, 490–503 (2013). [PMID: 23911317]
  50. Lee, D. W. et al. Proliferation-associated SNF2-like gene (PASG): a SNF2 family member altered in leukemia. Cancer Res. 60, 3612–3622 (2000). [PMID: 10910076]
  51. Gresh, L. et al. The SWI/SNF chromatin-remodeling complex subunit SNF5 is essential for hepatocyte differentiation. EMBO J. 24, 3313–3324 (2005). [PMID: 16138077]
  52. Wang, L. et al. INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development. Cell Stem Cell 14, 575–591 (2014). [PMID: 24792115]
  53. Masliah-Planchon, J. et al. SWI/SNF chromatin remodeling and human malignancies. Annu. Rev. Pathol. 10, 145–171 (2015). [PMID: 25387058]
  54. Fedorov, O. et al. Selective targeting of the BRG/PB1 bromodomains impairs embryonic and trophoblast stem cell maintenance. Sci. Adv. 1, e1500723 (2015). [PMID: 26702435]
  55. Hiramatsu, H. et al. The role of the SWI/SNF chromatin remodeling complex in maintaining the stemness of glioma initiating cells. Sci. Rep. 7, 889 (2017). [PMID: 28420882]
  56. Morrison, A. J. et al. Mec1/Tel1 phosphorylation of the INO80 chromatin remodeling complex influences DNA damage checkpoint responses. Cell 130, 499–511 (2007). [PMID: 17693258]
  57. Batenburg, N. L. et al. ATM and CDK2 control chromatin remodeler CSB to inhibit RIF1 in DSB repair pathway choice. Nat. Commun. 8, 1921 (2017). [PMID: 29203878]
  58. Bourachot, B., Yaniv, M. & Muchardt, C. Growth inhibition by the mammalian SWI-SNF subunit Brm is regulated by acetylation. EMBO J. 22, 6505–6515 (2003). [PMID: 14657023]
  59. Choi, H. K. et al. The functional role of the CARM1-SNF5 complex and its associated HMT activity in transcriptional activation by thyroid hormone receptor. Exp. Mol. Med. 39, 544–555 (2007). [PMID: 17934343]
  60. Wang, L. et al. CARM1 methylates chromatin remodeling factor BAF155 to enhance tumor progression and metastasis. Cancer Cell. 30, 179–180 (2016). [PMID: 27479032]
  61. Karkhanis, V. et al. Versatility of PRMT5-induced methylation in growth control and development. Trends Biochem. Sci. 36, 633–641 (2011). [PMID: 21975038]
  62. Pal, S. et al. Human SWI/SNF-associated PRMT5 methylates histone H3 arginine 8 and negatively regulates expression of ST7 and NM23 tumor suppressor genes. Mol. Cell. Biol. 24, 9630–9645 (2004). [PMID: 15485929]
  63. Seth-Vollenweider, T. et al. Novel mechanism of negative regulation of 1,25-dihydroxyvitamin D3-induced 25-hydroxyvitamin D3 24-hydroxylase (Cyp24a1) Transcription: epigenetic modification involving cross-talk between protein-arginine methyltransferase 5 and the SWI/SNF complex. J. Biol. Chem. 289, 33958–33970 (2014). [PMID: 25324546]
  64. Lin, H. & Caroll, K. S. Introduction: posttranslational protein modification. Chem. Rev. 118, 887–888 (2018). [PMID: 29439579]
  65. Hsu, J. M. et al. Crosstalk between Arg 1175 methylation and Tyr 1173 phosphorylation negatively modulates EGFR-mediated ERK activation. Nat. Cell Biol. 13, 174–181 (2011). [PMID: 21258366]
  66. He, X. et al. PRMT1-mediated FLT3 arginine methylation promotes maintenance of FLT3-ITD(+) acute myeloid leukemia. Blood. 134, 548–560 (2019).
  67. Xi, S. et al. Lsh participates in DNA methylation and silencing of stem cell genes. Stem Cells 27, 2691–2702 (2009). [PMID: 19650037]
  68. Shi, Y. et al. Nuclear EGFR-PKM2 axis induces cancer stem cell-like characteristics in irradiation-resistant cells. Cancer Lett. 422, 81–93 (2018). [PMID: 29477380]
  69. Song, H. et al. Crosstalk between lysine methylation and phosphorylation of ATG16L1 dictates the apoptosis of hypoxia/reoxygenation-induced cardiomyocytes. Autophagy 14, 825–844 (2018). [PMID: 29634390]
  70. Hong, A. W. & Guan, K. L. Non-radioactive LATS in vitro Kinase Assay. Bio Protoc. 7, e2391 (2017).
  71. Yan, B. et al. Activation of AhR with nuclear IKKalpha regulates cancer stem-like properties in the occurrence of radioresistance. Cell Death Dis. 9, 490 (2018). [PMID: 29706625]

MeSH Term

Animals
Cell Line, Tumor
DNA Helicases
Female
Humans
Lung Neoplasms
Methylation
Mice
Mice, Nude
Neoplasm Proteins
Neoplastic Stem Cells
Phosphorylation

Chemicals

Neoplasm Proteins
DNA Helicases
HELLS protein, human

Word Cloud

Created with Highcharts 10.0.0LSHpropertiesPTMsmethylationstem-likecancerresidueincludingrolesactivityphosphorylationR309stem-cellhelicasemodulatingfunctionS503accumulationlungPosttranslationalmodificationsproteinschromatinmodifiersplaycrucialdynamicalterationvariousproteinfunctionsHoweverLymphoid-specificDNAmodifierstillclearlyclarifiedThereforeexploringmodulationwillgreatsignificanceunderstanddemonstratecapableundergoargininemethyltransferasePRMT5canmethylatemeanwhilewellphosphorylatedMAPK1kinaseshowsiteexhibitsdownregulationeventuallypromotingWhereasphosphorylation-deficientS503AmutantpromotesattenuatesindicatingcriticalThusstudyhighlightsimportancecrosstalkdeterminingmaintenancecross-talklymphoid-specificdrives

Similar Articles

Cited By