Emergence and Spread of Genotype 3.

Juliane Sørensen, Niccolò Vendramin, Camilla Priess, Dhamotharan Kannimuthu, Niels Henrik Henriksen, Tine Moesgaard Iburg, Niels Jørgen Olesen, Argelia Cuenca
Author Information
  1. Juliane Sørensen: Unit for Fish and Shellfish Diseases, National Institute of Aquatic Resources, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark. ORCID
  2. Niccolò Vendramin: Unit for Fish and Shellfish Diseases, National Institute of Aquatic Resources, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.
  3. Camilla Priess: Unit for Fish and Shellfish Diseases, National Institute of Aquatic Resources, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.
  4. Dhamotharan Kannimuthu: NMBU, Department of Food Safety and Infection Biology, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, 0454 Oslo, Norway.
  5. Niels Henrik Henriksen: Dansk Akvakultur, 8200 Aarhus, Denmark.
  6. Tine Moesgaard Iburg: Unit for Fish and Shellfish Diseases, National Institute of Aquatic Resources, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.
  7. Niels Jørgen Olesen: Unit for Fish and Shellfish Diseases, National Institute of Aquatic Resources, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.
  8. Argelia Cuenca: Unit for Fish and Shellfish Diseases, National Institute of Aquatic Resources, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark. ORCID

Abstract

(PRV) is a relevant pathogen for salmonid aquaculture worldwide. In 2015, a new genotype of PRV (genotype 3, PRV-3) was discovered in Norway, and in 2017 PRV-3 was detected for first time in Denmark in association with complex disease cases in rainbow trout in recirculating aquaculture systems (RAS). To explore the epidemiology of PRV-3 in Denmark, a surveillance study was conducted in 2017 to 2019. Fifty-three farms, including both flow through and RAS, were screened for PRV-3. Of the farms examined, PRV-3 was detected in thirty-eight (71.7%), with the highest prevalence in grow-out farms. Notably, in Denmark disease outbreaks were only observed in RAS. Additionally, wild Atlantic salmon and brown trout populations were included in the screening, and PRV-3 was not detected in the three years where samples were obtained (2016, 2018, and 2019). Historical samples in the form of archived material at the Danish National Reference Laboratory for Fish Diseases were also tested for the presence of PRV-3, allowing us to establish that the virus has been present in Denmark at least since 1995. Sequence analyses of segment S1 and M2, as well as full genome analyses of selected isolates, did not reveal clear association between genetic makeup in these two segments and virulence in the form of disease outbreaks in the field.

Keywords

References

  1. Mol Biol Evol. 1999 Jan;16(1):37-48 [PMID: 10331250]
  2. Bioinformatics. 2000 Jun;16(6):562-3 [PMID: 10980155]
  3. Genome Announc. 2018 Jun 14;6(24): [PMID: 29903813]
  4. Mol Biol Evol. 2008 Mar;25(3):568-79 [PMID: 18178545]
  5. Virology. 1999 Dec 20;265(2):218-25 [PMID: 10600594]
  6. PLoS One. 2017 Jul 5;12(7):e0180293 [PMID: 28678799]
  7. J Fish Dis. 2019 Jun;42(6):935-945 [PMID: 30972792]
  8. PLoS One. 2017 Aug 25;12(8):e0183781 [PMID: 28841684]
  9. Sci Rep. 2019 Mar 13;9(1):3297 [PMID: 30867461]
  10. Mol Biol Evol. 2018 Jan 1;35(1):247-251 [PMID: 29029186]
  11. Viruses. 2019 Jan 28;11(2): [PMID: 30696111]
  12. Dis Aquat Organ. 2015 Sep 17;116(1):1-9 [PMID: 26378403]
  13. J Fish Dis. 2020 Nov;43(11):1331-1352 [PMID: 32935367]
  14. PLoS One. 2015 Jul 15;10(7):e0131638 [PMID: 26176955]
  15. Mol Biol Evol. 2018 Jun 1;35(6):1547-1549 [PMID: 29722887]
  16. AIDS Res Hum Retroviruses. 2005 Jan;21(1):98-102 [PMID: 15665649]
  17. Transbound Emerg Dis. 2019 Jan;66(1):14-21 [PMID: 30230250]
  18. J Mol Evol. 1980 Dec;16(2):111-20 [PMID: 7463489]
  19. Proc Natl Acad Sci U S A. 2001 Nov 20;98(24):13757-62 [PMID: 11717435]
  20. Virology. 2015 Sep;483:229-35 [PMID: 25985441]
  21. Rev Sci Tech. 1995 Jun;14(2):419-34 [PMID: 7579640]
  22. Viruses. 2019 May 22;11(5): [PMID: 31121920]
  23. J Mol Evol. 1985;22(2):160-74 [PMID: 3934395]
  24. J Fish Dis. 2020 Jul 6;: [PMID: 32632958]
  25. Vet Res. 2019 Feb 18;50(1):14 [PMID: 30777130]
  26. PLoS One. 2018 Oct 22;13(10):e0206164 [PMID: 30346982]
  27. Mol Biol Evol. 2006 Oct;23(10):1891-901 [PMID: 16818476]
  28. Syst Biol. 2003 Oct;52(5):696-704 [PMID: 14530136]
  29. PLoS One. 2013 Jul 29;8(7):e70075 [PMID: 23922911]
  30. PLoS One. 2016 Oct 27;11(10):e0165424 [PMID: 27788206]
  31. J Fish Dis. 2020 Jul;43(7):719-728 [PMID: 32476167]
  32. Virology. 2001 Sep 1;287(2):333-48 [PMID: 11531411]
  33. J Fish Dis. 2015 Aug;38(8):713-28 [PMID: 25048977]
  34. J Fish Dis. 2019 Mar;42(3):391-396 [PMID: 30659618]
  35. Viruses. 2018 Apr 02;10(4): [PMID: 29614838]
  36. Front Immunol. 2019 Sep 06;10:2119 [PMID: 31552049]
  37. Vet Res. 2015 Mar 06;46:26 [PMID: 25888832]
  38. Bioinformatics. 2000 Jul;16(7):573-82 [PMID: 11038328]
  39. Nucleic Acids Res. 2004 Mar 19;32(5):1792-7 [PMID: 15034147]
  40. Syst Biol. 2010 May;59(3):307-21 [PMID: 20525638]
  41. J Fish Dis. 2016 Feb;39(2):117-28 [PMID: 25630226]
  42. J Mol Evol. 1992 Feb;34(2):126-9 [PMID: 1556748]
  43. PLoS One. 2010 Jul 09;5(7):e11487 [PMID: 20634888]

Grants

  1. granted the 16th of March 2018/Henrik Henriksens Fond
  2. 34009-19-1510/GUDP
  3. Work program 2019-2020/European Reference Laboratory for Fish and Crustacean Diseases

Word Cloud

Created with Highcharts 10.0.0PRV-3Denmarkgenotype3detecteddiseasetroutRASfarmsPRVaquaculture2017associationrainbowepidemiologysurveillance2019outbreakssamplesformvirusanalysesfullrelevantpathogensalmonidworldwide2015newdiscoveredNorwayfirsttimecomplexcasesrecirculatingsystemsexplorestudyconductedFifty-threeincludingflowscreenedexaminedthirty-eight717%highestprevalencegrow-outNotablyobservedAdditionallywildAtlanticsalmonbrownpopulationsincludedscreeningthreeyearsobtained20162018HistoricalarchivedmaterialDanishNationalReferenceLaboratoryFishDiseasesalsotestedpresenceallowingusestablishpresentleastsince1995SequencesegmentS1M2wellgenomeselectedisolatesrevealcleargeneticmakeuptwosegmentsvirulencefieldEmergenceSpreadGenotypePiscineorthoreovirusdouble-strandedRNAgenomesphylogeneticanalysisprogram

Similar Articles

Cited By (7)