Genenames.org: the HGNC and VGNC resources in 2021.

Susan Tweedie, Bryony Braschi, Kristian Gray, Tamsin E M Jones, Ruth L Seal, Bethan Yates, Elspeth A Bruford
Author Information
  1. Susan Tweedie: HUGO Gene Nomenclature Committee, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK.
  2. Bryony Braschi: HUGO Gene Nomenclature Committee, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK.
  3. Kristian Gray: HUGO Gene Nomenclature Committee, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK.
  4. Tamsin E M Jones: HUGO Gene Nomenclature Committee, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK.
  5. Ruth L Seal: HUGO Gene Nomenclature Committee, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK.
  6. Bethan Yates: HUGO Gene Nomenclature Committee, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK.
  7. Elspeth A Bruford: HUGO Gene Nomenclature Committee, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK.

Abstract

The HUGO Gene Nomenclature Committee (HGNC) based at EMBL's European Bioinformatics Institute (EMBL-EBI) assigns unique symbols and names to human genes. There are over 42,000 approved gene symbols in our current database of which over 19 000 are for protein-coding genes. While we still update placeholder and problematic symbols, we are working towards stabilizing symbols where possible; over 2000 symbols for disease associated genes are now marked as stable in our symbol reports. All of our data is available at the HGNC website https://www.genenames.org. The Vertebrate Gene Nomenclature Committee (VGNC) was established to assign standardized nomenclature in line with human for vertebrate species lacking their own nomenclature committee. In addition to the previous VGNC core species of chimpanzee, cow, horse and dog, we now name genes in cat, macaque and pig. Gene groups have been added to VGNC and currently include two complex families: olfactory receptors (ORs) and cytochrome P450s (CYPs). In collaboration with specialists we have also named CYPs in species beyond our core set. All VGNC data is available at https://vertebrate.genenames.org/. This article provides an overview of our online data and resources, focusing on updates over the last two years.

References

  1. Nucleic Acids Res. 2020 Jan 8;48(D1):D756-D761 [PMID: 31691824]
  2. Nat Struct Biol. 2001 Jul;8(7):641-8 [PMID: 11427897]
  3. Nucleic Acids Res. 2019 Jan 8;47(D1):D801-D806 [PMID: 30407599]
  4. Curr Protoc Bioinformatics. 2016 Jun 20;54:1.30.1-1.30.33 [PMID: 27322403]
  5. J Clin Invest. 2018 Oct 1;128(10):4510-4524 [PMID: 30198906]
  6. Nucleic Acids Res. 2020 Jan 8;48(D1):D682-D688 [PMID: 31691826]
  7. Nat Biotechnol. 2019 Apr;37(4):358-367 [PMID: 30940948]
  8. Nucleic Acids Res. 2020 Jan 8;48(D1):D731-D742 [PMID: 31713623]
  9. Nucleic Acids Res. 2018 Jan 4;46(D1):D477-D485 [PMID: 29106550]
  10. Nucleic Acids Res. 2020 Jan 8;48(D1):D704-D715 [PMID: 31701156]
  11. Nucleic Acids Res. 2019 Jan 8;47(D1):D155-D162 [PMID: 30423142]
  12. Nucleic Acids Res. 2019 Jan 8;47(D1):D786-D792 [PMID: 30304474]
  13. Hum Genomics. 2016 Feb 03;10:6 [PMID: 26842383]
  14. J Invest Dermatol. 2019 Jun;139(6):1373-1384 [PMID: 30594489]
  15. N Engl J Med. 2015 Jun 4;372(23):2235-42 [PMID: 26014595]
  16. Nucleic Acids Res. 2020 Jan 8;48(D1):D835-D844 [PMID: 31777943]
  17. BMC Evol Biol. 2020 Apr 15;20(1):42 [PMID: 32295537]
  18. Nucleic Acids Res. 2015 Jan;43(Database issue):D36-42 [PMID: 25355515]
  19. F1000Res. 2016 Dec 21;5: [PMID: 28149502]
  20. Nucleic Acids Res. 2014 Jan;42(Database issue):D993-D1000 [PMID: 24150940]
  21. Nucleic Acids Res. 2019 Jan 8;47(D1):D506-D515 [PMID: 30395287]
  22. Nucleic Acids Res. 2017 Jan 4;45(D1):D619-D625 [PMID: 27799471]
  23. J Med Libr Assoc. 2006 Jul;94(3):343-8 [PMID: 16888670]
  24. Brief Bioinform. 2007 Jan;8(1):2-5 [PMID: 16951416]
  25. Genome Res. 2019 Dec;29(12):2073-2087 [PMID: 31537640]
  26. Nucleic Acids Res. 2020 Jan 8;48(D1):D650-D658 [PMID: 31552413]
  27. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W468-72 [PMID: 24753429]
  28. Nucleic Acids Res. 2016 Jan 4;44(D1):D184-9 [PMID: 26673694]
  29. Nat Genet. 2020 Aug;52(8):754-758 [PMID: 32747822]
  30. Nucleic Acids Res. 2019 Jan 8;47(D1):D419-D426 [PMID: 30407594]
  31. EMBO J. 2020 Mar 16;39(6):e103777 [PMID: 32090359]
  32. Nucleic Acids Res. 2019 Jan 8;47(D1):D1038-D1043 [PMID: 30445645]
  33. Nucleic Acids Res. 2019 Jan 8;47(D1):D221-D229 [PMID: 30395267]

Grants

  1. U24 HG003345/NHGRI NIH HHS
  2. 208349/Z/17/Z/Wellcome Trust

MeSH Term

Animals
Computational Biology
Databases, Genetic
Genes
Genomics
Humans
Internet
Proteins
Species Specificity
Terminology as Topic
User-Computer Interface
Vertebrates

Chemicals

Proteins

Word Cloud

Created with Highcharts 10.0.0symbolsVGNCgenesGeneHGNCdataspeciesNomenclatureCommitteehuman000nowavailablegenenamesnomenclaturecoretwoCYPsresourcesHUGObasedEMBL'sEuropeanBioinformaticsInstituteEMBL-EBIassignsuniquenames42approvedgenecurrentdatabase19protein-codingstillupdateplaceholderproblematicworkingtowardsstabilizingpossible2000diseaseassociatedmarkedstablesymbolreportswebsitehttps://wwworgVertebrateestablishedassignstandardizedlinevertebratelackingcommitteeadditionpreviouschimpanzeecowhorsedognamecatmacaquepiggroupsaddedcurrentlyincludecomplexfamilies:olfactoryreceptorsORscytochromeP450scollaborationspecialistsalsonamedbeyondsethttps://vertebrateorg/articleprovidesoverviewonlinefocusingupdateslastyearsGenenamesorg:2021

Similar Articles

Cited By (188)