Comparative transcriptomic and metabolomic analyses of carotenoid biosynthesis reveal the basis of white petal color in Brassica napus.

Ledong Jia, Junsheng Wang, Rui Wang, Mouzheng Duan, Cailin Qiao, Xue Chen, Guoqiang Ma, Xintong Zhou, Meichen Zhu, Fuyu Jing, Shengsen Zhang, Cunmin Qu, Jiana Li
Author Information
  1. Ledong Jia: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  2. Junsheng Wang: College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou, 466001, China.
  3. Rui Wang: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  4. Mouzheng Duan: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  5. Cailin Qiao: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  6. Xue Chen: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  7. Guoqiang Ma: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  8. Xintong Zhou: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  9. Meichen Zhu: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  10. Fuyu Jing: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  11. Shengsen Zhang: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  12. Cunmin Qu: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China.
  13. Jiana Li: Chongqing Rapeseed Engineering Research Center, College of Agronomy and Biotechnology, Southwest University, Chongqing, 400715, China. ljn1950@swu.edu.cn. ORCID

Abstract

MAIN CONCLUSION: The molecular mechanism underlying white petal color in Brassica napus was revealed by transcriptomic and metabolomic analyses. Rapeseed (Brassica napus L.) is one of the most important oilseed crops worldwide, but the mechanisms underlying flower color in this crop are known less. Here, we performed metabolomic and transcriptomic analyses of the yellow-flowered rapeseed cultivar 'Zhongshuang 11' (ZS11) and the white-flowered inbred line 'White Petal' (WP). The total carotenoid contents were 1.778-fold and 1.969-fold higher in ZS11 vs. WP petals at stages S2 and S4, respectively. Our findings suggest that white petal color in WP flowers is primarily due to decreased lutein and zeaxanthin contents. Transcriptome analysis revealed 10,116 differentially expressed genes with a fourfold or greater change in expression (P-value less than 0.001) in WP vs. ZS11 petals, including 1,209 genes that were differentially expressed at four different stages and 20 genes in the carotenoid metabolism pathway. BnNCED4b, encoding a protein involved in carotenoid degradation, was expressed at abnormally high levels in WP petals, suggesting it might play a key role in white petal formation. The results of qRT-PCR were consistent with the transcriptome data. The results of this study provide important insights into the molecular mechanisms of the carotenoid metabolic pathway in rapeseed petals, and the candidate genes identified in this study provide a resource for the creation of new B. napus germplasms with different petal colors.

Keywords

References

  1. Plant Cell. 1999 May;11(5):949-56 [PMID: 10330478]
  2. Plant J. 2012 May;70(3):377-88 [PMID: 22151247]
  3. Front Plant Sci. 2019 Aug 09;10:1017 [PMID: 31447877]
  4. Sci Rep. 2017 Jul 19;7(1):5786 [PMID: 28724949]
  5. Plant Mol Biol. 2016 Jul;91(4-5):485-96 [PMID: 27106478]
  6. Plant J. 1997 Sep;12(3):625-34 [PMID: 9351247]
  7. Plant Physiol. 2013 Oct;163(2):1026-36 [PMID: 24006286]
  8. Pharmacol Res. 2007 Mar;55(3):207-16 [PMID: 17349800]
  9. Mol Plant. 2013 Jan;6(1):188-201 [PMID: 22933713]
  10. J Agric Food Chem. 2019 Oct 9;67(40):11053-11065 [PMID: 31525973]
  11. Curr Opin Plant Biol. 2001 Jun;4(3):210-8 [PMID: 11312131]
  12. Mol Cells. 2011 Apr;31(4):303-13 [PMID: 21359674]
  13. Annu Rev Plant Biol. 2005;56:165-85 [PMID: 15862093]
  14. Hortic Res. 2020 Oct 1;7:161 [PMID: 33082968]
  15. J Nutr. 2002 Mar;132(3):506S-510S [PMID: 11880581]
  16. Curr Opin Plant Biol. 2006 Jun;9(3):315-21 [PMID: 16616608]
  17. Plant J. 2008 May;54(4):733-49 [PMID: 18476875]
  18. Sci Rep. 2018 Feb 21;8(1):3413 [PMID: 29467500]
  19. Nucleic Acids Res. 2019 Jan 8;47(D1):D8-D14 [PMID: 30365034]
  20. Plant Physiol. 2008 Nov;148(3):1583-602 [PMID: 18805951]
  21. J Agric Food Chem. 2016 Jul 13;64(27):5454-63 [PMID: 27327494]
  22. Plant Cell. 1993 Apr;5(4):379-87 [PMID: 8485401]
  23. Genomics Proteomics Bioinformatics. 2017 Feb;15(1):14-18 [PMID: 28387199]
  24. Science. 2014 Aug 22;345(6199):950-3 [PMID: 25146293]
  25. Plant Cell. 1999 Jul;11(7):1217-26 [PMID: 10402424]
  26. Annu Rev Plant Physiol Plant Mol Biol. 1998 Jun;49:557-583 [PMID: 15012246]
  27. New Phytol. 2015 Jun;206(4):1513-26 [PMID: 25690717]
  28. Plant Physiol. 2009 Jun;150(2):562-72 [PMID: 19346441]
  29. New Phytol. 2016 Feb;209(3):1049-57 [PMID: 26377817]
  30. Plant J. 2002 Dec;32(6):1011-22 [PMID: 12492842]
  31. Nucleic Acids Res. 2017 Jan 4;45(D1):D1040-D1045 [PMID: 27924042]
  32. New Phytol. 2017 Oct;216(1):178-192 [PMID: 28681945]

Grants

  1. 2018YFD0100504-05/the National Key Research and Development Plan
  2. 31830067/the National Natural Science Foundation of China
  3. B12006/the 111 Project

MeSH Term

Brassica napus
Carotenoids
Flowers
Gene Expression Regulation, Plant
Metabolome
Pigmentation
Transcriptome

Chemicals

Carotenoids

Word Cloud

Created with Highcharts 10.0.0petalWPcarotenoidwhitecolornapuspetalsgenesBrassicatranscriptomicmetabolomicanalysesZS111expressedpathwaymolecularunderlyingrevealedimportantmechanismslessrapeseedcontentsvsstagesdifferentiallydifferentresultsstudyprovideCarotenoidMAINCONCLUSION:mechanismRapeseedLoneoilseedcropsworldwideflowercropknownperformedyellow-floweredcultivar'Zhongshuang11'white-floweredinbredline'WhitePetal'total778-fold969-foldhigherS2S4respectivelyfindingssuggestflowersprimarilyduedecreasedluteinzeaxanthinTranscriptomeanalysis10116fourfoldgreaterchangeexpressionP-value0001including209four20metabolismBnNCED4bencodingproteininvolveddegradationabnormallyhighlevelssuggestingmightplaykeyroleformationqRT-PCRconsistenttranscriptomedatainsightsmetaboliccandidateidentifiedresourcecreationnewBgermplasmscolorsComparativebiosynthesisrevealbasisBnNCED4biosyntheticcleavagedioxygenasesLuteinRNA-seqZeaxanthin

Similar Articles

Cited By