The chloroplast genome of a unicellular green alga strain isolated from the rubber processing wastewater.

Bingying Han, Yaojia Mu, Deguan Tan, Shuai Ma, Lili Fu, Xuepiao Sun, Jiaming Zhang
Author Information
  1. Bingying Han: Institute of Tropical Bioscience and Biotechnology, MOA Key Laboratory of Tropical Crops Biology and Genetic Resources, Hainan Bioenergy Center, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
  2. Yaojia Mu: College of Life Sciences, Nanjing Agricultural University, Nanjing, China.
  3. Deguan Tan: Institute of Tropical Bioscience and Biotechnology, MOA Key Laboratory of Tropical Crops Biology and Genetic Resources, Hainan Bioenergy Center, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
  4. Shuai Ma: Institute of Tropical Bioscience and Biotechnology, MOA Key Laboratory of Tropical Crops Biology and Genetic Resources, Hainan Bioenergy Center, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
  5. Lili Fu: Institute of Tropical Bioscience and Biotechnology, MOA Key Laboratory of Tropical Crops Biology and Genetic Resources, Hainan Bioenergy Center, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
  6. Xuepiao Sun: Institute of Tropical Bioscience and Biotechnology, MOA Key Laboratory of Tropical Crops Biology and Genetic Resources, Hainan Bioenergy Center, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.
  7. Jiaming Zhang: Institute of Tropical Bioscience and Biotechnology, MOA Key Laboratory of Tropical Crops Biology and Genetic Resources, Hainan Bioenergy Center, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.

Abstract

ITBBA3-12 has a role in the purification of the rubber processing wastewater. Its complete chloroplast genome contains 168369 bp, with a G + C content of 33.0%. A total of 147 genes were annotated, including 113 protein-coding genes, three rRNA (rrn23, rrn16, and rrn5) genes, and 31 tRNA genes. The significant feature of the chloroplast genome is that the genes encoding subunit V (petG), VI (petL), and apocytochrome f (petA) of the cytochrome b6/f complex are in triplicate, which was not observed in the other strains. Phylogenetic analysis using the chloroplast genomes of Chlorophyta species indicated that ITBBA3-12 is closely related to strain UTEX259 and NJ-7, and they clustered in the lineage.

Keywords

References

  1. Genome Res. 2017 May;27(5):722-736 [PMID: 28298431]
  2. Mitochondrial DNA B Resour. 2020 Jul 10;5(3):2732-2733 [PMID: 33457925]
  3. PLoS One. 2015 Sep 16;10(9):e0138824 [PMID: 26376440]
  4. Mol Biol Evol. 2016 Jul;33(7):1870-4 [PMID: 27004904]
  5. J Bioenerg Biomembr. 1994 Feb;26(1):17-29 [PMID: 8027020]
  6. Nucleic Acids Res. 2019 Jan 8;47(D1):D8-D14 [PMID: 30365034]

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