A hybrid method of recurrent neural network and graph neural network for next-period prescription prediction.

Sicen Liu, Tao Li, Haoyang Ding, Buzhou Tang, Xiaolong Wang, Qingcai Chen, Jun Yan, Yi Zhou
Author Information
  1. Sicen Liu: Department of Computer Science, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, China.
  2. Tao Li: Department of Computer Science, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, China.
  3. Haoyang Ding: Yidu Cloud (Beijing) Technology Co., Ltd, Beijing, China.
  4. Buzhou Tang: Department of Computer Science, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, China. ORCID
  5. Xiaolong Wang: Department of Computer Science, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, China.
  6. Qingcai Chen: Department of Computer Science, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, China.
  7. Jun Yan: Yidu Cloud (Beijing) Technology Co., Ltd, Beijing, China.
  8. Yi Zhou: Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, China.

Abstract

Electronic health records (EHRs) have been widely used to help physicians to make decisions by predicting medical events such as diseases, prescriptions, outcomes, and so on. How to represent patient longitudinal medical data is the key to making these predictions. Recurrent neural network (RNN) is a popular model for patient longitudinal medical data representation from the view of patient status sequences, but it cannot represent complex interactions among different types of medical information, i.e., temporal medical event graphs, which can be represented by graph neural network (GNN). In this paper, we propose a hybrid method of RNN and GNN, called RGNN, for next-period prescription prediction from two views, where RNN is used to represent patient status sequences, and GNN is used to represent temporal medical event graphs. Experiments conducted on the public MIMIC-III ICU data show that the proposed method is effective for next-period prescription prediction, and RNN and GNN are mutually complementary.

Keywords

References

  1. BMC Genomics. 2017 Nov 17;18(Suppl 9):845 [PMID: 29219072]
  2. Artif Intell Med. 2005 Jun;34(2):113-27 [PMID: 15894176]
  3. JMLR Workshop Conf Proc. 2016 Aug;56:301-318 [PMID: 28286600]
  4. Ann Surg Oncol. 2018 May;25(5):1254-1261 [PMID: 29450756]
  5. Cancer Prev Res (Phila). 2009 Jul;2(7):617-24 [PMID: 19584075]
  6. IEEE Trans Neural Netw. 2009 Jan;20(1):61-80 [PMID: 19068426]
  7. Proc Conf Empir Methods Nat Lang Process. 2016 Nov;2016:856-865 [PMID: 28004040]
  8. Med Image Anal. 2017 Oct;41:1 [PMID: 28684016]
  9. J Pediatr Surg. 2019 Aug;54(8):1613-1616 [PMID: 30270118]
  10. Bioinformatics. 2018 Jul 1;34(13):i457-i466 [PMID: 29949996]
  11. Nat Med. 2019 Jan;25(1):24-29 [PMID: 30617335]
  12. Proc Conf. 2016 Jun;2016:473-482 [PMID: 27885364]
  13. NPJ Digit Med. 2018 May 8;1:18 [PMID: 31304302]
  14. J Cardiothorac Vasc Anesth. 2018 Dec;32(6):2676-2682 [PMID: 29678435]
  15. IEEE/ACM Trans Comput Biol Bioinform. 2021 May-Jun;18(3):1093-1105 [PMID: 31425047]
  16. KDD. 2017 Aug;2017:787-795 [PMID: 33717639]

Word Cloud

Created with Highcharts 10.0.0medicalneuralnetworkpredictionrepresentpatientRNNGNNprescriptionuseddatamethodnext-periodlongitudinalRecurrentstatussequencestemporaleventgraphsgraphhybridElectronichealthrecordsEHRswidelyhelpphysiciansmakedecisionspredictingeventsdiseasesprescriptionsoutcomeskeymakingpredictionspopularmodelrepresentationviewcomplexinteractionsamongdifferenttypesinformationiecanrepresentedpaperproposecalledRGNNtwoviewsExperimentsconductedpublicMIMIC-IIIICUshowproposedeffectivemutuallycomplementaryrecurrentGraphMedicalNext-period

Similar Articles

Cited By