Fungal Cell Factories for Efficient and Sustainable Production of Proteins and Peptides.

Mette L��beck, Peter Stephensen L��beck
Author Information
  1. Mette L��beck: Department of Chemistry and Bioscience, Aalborg University, DK-9100 Aalborg, Denmark. ORCID
  2. Peter Stephensen L��beck: Department of Chemistry and Bioscience, Aalborg University, DK-9100 Aalborg, Denmark.

Abstract

Filamentous fungi are a large and diverse taxonomically group of microorganisms found in all habitats worldwide. They grow as a network of cells called hyphae. Since filamentous fungi live in very diverse habitats, they produce different enzymes to degrade material for their living, for example hydrolytic enzymes to degrade various kinds of biomasses. Moreover, they produce defense proteins (antimicrobial peptides) and proteins for attaching surfaces (hydrophobins). Many of them are easy to cultivate in different known setups (submerged fermentation and solid-state fermentation) and their secretion of proteins and enzymes are often much larger than what is seen from yeast and bacteria. Therefore, filamentous fungi are in many industries the preferred production hosts of different proteins and enzymes. Edible fungi have traditionally been used as food, such as mushrooms or in fermented foods. New trends are to use edible fungi to produce myco-protein enriched foods. This review gives an overview of the different kinds of proteins, enzymes, and peptides produced by the most well-known fungi used as cell factories for different purposes and applications. Moreover, we describe some of the challenges that are important to consider when filamentous fungi are optimized as efficient cell factories.

Keywords

References

  1. Microb Cell Fact. 2016 Jun 10;15(1):106 [PMID: 27287427]
  2. Microbiol Mol Biol Rev. 2000 Sep;64(3):461-88 [PMID: 10974122]
  3. Eur J Clin Nutr. 2005 May;59(5):623-31 [PMID: 15867940]
  4. Bioresour Technol. 2021 Mar;324:124623 [PMID: 33434871]
  5. J Appl Microbiol. 2005;98(4):789-805 [PMID: 15752324]
  6. Appl Microbiol Biotechnol. 2022 Jan;106(2):647-661 [PMID: 35019997]
  7. FEBS J. 2019 Jan;286(2):241-278 [PMID: 30027602]
  8. Appl Microbiol Biotechnol. 2020 Mar;104(6):2411-2425 [PMID: 31993706]
  9. Appl Microbiol Biotechnol. 2015 Jan;99(1):121-32 [PMID: 25384707]
  10. Bioresour Technol. 2014 Oct;169:143-148 [PMID: 25043347]
  11. Amino Acids. 2012 Aug;43(2):763-71 [PMID: 22038182]
  12. Polymers (Basel). 2020 Mar 02;12(3): [PMID: 32121667]
  13. Food Chem. 2019 Aug 15;289:223-231 [PMID: 30955606]
  14. Genome Biol. 2011;12(4):R40 [PMID: 21501500]
  15. ACS Synth Biol. 2021 Mar 19;10(3):579-588 [PMID: 33651591]
  16. Methods Mol Biol. 2018;1796:3-23 [PMID: 29856042]
  17. Bioresour Bioprocess. 2021 Jun 22;8(1):52 [PMID: 38650252]
  18. J Fungi (Basel). 2021 Jul 12;7(7): [PMID: 34356932]
  19. Fungal Genet Biol. 2019 Sep;130:43-53 [PMID: 31048007]
  20. J Biol Chem. 1993 Sep 15;268(26):19364-8 [PMID: 8366083]
  21. J Biol Eng. 2019 Jan 23;13:10 [PMID: 30679947]
  22. Biotechnol Adv. 2012 Sep-Oct;30(5):1119-39 [PMID: 21968147]
  23. Front Microbiol. 2014 Feb 27;5:75 [PMID: 24578701]
  24. J Basic Microbiol. 2011 Jun;51(3):253-62 [PMID: 21298690]
  25. Microbiol Mol Biol Rev. 2001 Dec;65(4):497-522, table of contents [PMID: 11729262]
  26. PLoS Genet. 2021 Nov 17;17(11):e1009924 [PMID: 34788288]
  27. Biotechnol Lett. 2008 Jan;30(1):7-14 [PMID: 17846708]
  28. FEMS Microbiol Rev. 2005 Nov;29(5):877-96 [PMID: 16219510]
  29. Biosci Rep. 2017 Dec 15;37(6): [PMID: 29162666]
  30. Front Microbiol. 2021 Feb 23;12:644404 [PMID: 33708187]
  31. Appl Microbiol Biotechnol. 2018 Oct;102(20):8621-8628 [PMID: 30078136]
  32. Can J Microbiol. 2011 Aug;57(8):638-50 [PMID: 21815831]
  33. Appl Biochem Biotechnol. 2002 Spring;98-100:165-76 [PMID: 12018245]
  34. J Fungi (Basel). 2021 Jul 01;7(7): [PMID: 34356913]
  35. Fungal Biol Biotechnol. 2020 Jul 01;7:11 [PMID: 32626593]
  36. J Biosci Bioeng. 2019 Dec;128(6):637-654 [PMID: 31204199]
  37. Curr Dev Nutr. 2019 Apr 04;3(6):nzz021 [PMID: 31187084]
  38. Appl Microbiol Biotechnol. 2021 Apr;105(8):3019-3025 [PMID: 33825000]
  39. Mol Biol Evol. 2021 Oct 27;38(11):5175-5189 [PMID: 34320203]
  40. Biosci Rep. 2017 Jan 13;37(1): [PMID: 27913751]
  41. Bioresour Bioprocess. 2021 Oct 22;8(1):107 [PMID: 38650205]
  42. Bioresour Technol. 2019 Feb;273:114-121 [PMID: 30423494]
  43. Biotechnol Biofuels. 2016 Mar 17;9:68 [PMID: 26997974]
  44. PLoS One. 2015 Jul 15;10(7):e0133085 [PMID: 26177455]
  45. Nat Biotechnol. 2007 Feb;25(2):221-31 [PMID: 17259976]
  46. J Appl Microbiol. 2018 Sep;125(3):632-645 [PMID: 29786939]
  47. J Biol Chem. 2012 Dec 7;287(50):42361-72 [PMID: 23093408]
  48. Int J Food Microbiol. 2012 Mar 15;154(3):87-97 [PMID: 22257932]
  49. Fungal Biol Biotechnol. 2020 Apr 2;7:5 [PMID: 32280481]
  50. Biotechnol Biofuels. 2017 Jun 12;10:152 [PMID: 28616076]
  51. Bioresour Technol. 2022 Jan;344(Pt A):126200 [PMID: 34710591]
  52. Fungal Biol Rev. 2013 Jan;26(4):132-145 [PMID: 23412850]
  53. Eur J Biochem. 1997 Jul 15;247(2):605-13 [PMID: 9266703]
  54. Appl Microbiol Biotechnol. 2011 Sep;91(6):1477-92 [PMID: 21785931]
  55. Microbiol Spectr. 2017 Sep;5(5): [PMID: 28917057]
  56. J Biol Chem. 1997 Apr 11;272(15):10169-74 [PMID: 9092563]
  57. Int J Syst Evol Microbiol. 2011 Dec;61(Pt 12):3077-3083 [PMID: 21335500]
  58. Appl Biochem Biotechnol. 2021 Sep;193(9):2993-3016 [PMID: 33871765]
  59. Trends Biotechnol. 2005 Sep;23(9):468-74 [PMID: 15967521]
  60. Bioresour Technol. 2022 Jan;344(Pt B):126415 [PMID: 34838977]
  61. J Biosci Bioeng. 2016 Jan;121(1):27-35 [PMID: 26073313]
  62. Trends Biotechnol. 2002 May;20(5):200-6 [PMID: 11943375]
  63. EFSA J. 2020 Feb 03;18(2):e05966 [PMID: 32874212]
  64. BMC Biotechnol. 2009 Aug 26;9:74 [PMID: 19709419]
  65. Molecules. 2021 Jun 05;26(11): [PMID: 34198909]
  66. BMC Res Notes. 2010 Dec 23;3:344 [PMID: 21182770]
  67. Bioresour Technol. 2019 Mar;276:146-153 [PMID: 30623869]
  68. Appl Microbiol Biotechnol. 2015 Feb;99(4):1587-97 [PMID: 25564034]
  69. Biotechnol Biofuels. 2016 Mar 17;9:66 [PMID: 26989443]
  70. Biomolecules. 2013 Sep 03;3(3):612-31 [PMID: 24970184]
  71. J Biosci. 2021;46: [PMID: 33576343]
  72. FEBS J. 2019 Jan;286(2):311-321 [PMID: 30062765]
  73. Fungal Biol Biotechnol. 2021 Aug 23;8(1):8 [PMID: 34425914]
  74. Lett Appl Microbiol. 2014 Aug;59(2):224-30 [PMID: 24725208]
  75. Mar Drugs. 2019 Sep 29;17(10): [PMID: 31569458]
  76. Methods Mol Biol. 2021;2178:3-10 [PMID: 33128738]
  77. Appl Microbiol Biotechnol. 2018 Aug;102(15):6357-6372 [PMID: 29860590]
  78. PLoS Pathog. 2012;8(5):e1002700 [PMID: 22693445]
  79. Front Microbiol. 2020 Jul 14;11:1617 [PMID: 32760377]
  80. Chembiochem. 2018 Jan 4;19(1):7-21 [PMID: 29235217]
  81. Sci Rep. 2020 Nov 20;10(1):20267 [PMID: 33219291]
  82. J Environ Manage. 2021 Mar 1;281:111901 [PMID: 33434763]
  83. Appl Microbiol Biotechnol. 2018 Feb;102(4):1797-1807 [PMID: 29305699]
  84. Biotechnol Adv. 2021 Nov 15;52:107833 [PMID: 34481893]
  85. Front Cell Infect Microbiol. 2020 Mar 17;10:105 [PMID: 32257965]
  86. Methods Enzymol. 2002;350:248-57 [PMID: 12073316]
  87. Mol Biotechnol. 2002 Sep;22(1):87-98 [PMID: 12353915]
  88. Trends Biotechnol. 1994 Feb;12(2):50-7 [PMID: 7764536]
  89. Nature. 2005 Oct 13;437(7061):975-80 [PMID: 16222292]
  90. Bioresour Technol. 2022 Jan;344(Pt A):126209 [PMID: 34715339]
  91. Front Bioeng Biotechnol. 2020 Jul 08;8:691 [PMID: 32733865]
  92. Biotechnol Biofuels. 2020 Dec 14;13(1):206 [PMID: 33317620]
  93. Biotechnol Adv. 1993;11(3):469-79 [PMID: 14545669]
  94. Appl Microbiol Biotechnol. 2016 Feb;100(4):1799-1809 [PMID: 26521243]
  95. Appl Microbiol Biotechnol. 2018 Nov;102(22):9481-9515 [PMID: 30293194]
  96. Molecules. 2021 Apr 23;26(9): [PMID: 33922630]
  97. Biotechnol Biofuels. 2020 May 22;13:93 [PMID: 32461765]
  98. Am J Bot. 2011 Mar;98(3):426-38 [PMID: 21613136]
  99. ISME J. 2019 Mar;13(3):588-602 [PMID: 30301946]
  100. Biomed Res Int. 2016;2016:7123587 [PMID: 27957499]
  101. Protein Eng. 1997 Nov;10(11):1339-45 [PMID: 9514124]
  102. Biotechnol Adv. 2004 Jan;22(3):189-259 [PMID: 14665401]
  103. Bioresour Technol. 2022 Jan;343:126065 [PMID: 34624472]
  104. Foods. 2020 Aug 13;9(8): [PMID: 32823542]
  105. Fungal Genet Biol. 2008 Dec;45(12):1591-9 [PMID: 18930158]
  106. Essays Biochem. 2021 Jul 26;65(2):213-224 [PMID: 33955461]
  107. Microbiol Res. 2021 Oct;251:126835 [PMID: 34399103]
  108. Methods Mol Biol. 2018;1796:37-45 [PMID: 29856044]
  109. World J Microbiol Biotechnol. 2019 Mar 21;35(4):54 [PMID: 30900052]
  110. Curr Opin Biotechnol. 2003 Aug;14(4):438-43 [PMID: 12943855]
  111. Proteomics. 2013 Feb;13(3-4):597-608 [PMID: 23349114]
  112. Appl Microbiol Biotechnol. 2005 Sep;68(5):598-606 [PMID: 16082554]
  113. Sci Rep. 2017 Jul 20;7(1):6039 [PMID: 28729612]
  114. Proc Natl Acad Sci U S A. 2012 May 29;109(22):8495-500 [PMID: 22586077]
  115. Front Bioeng Biotechnol. 2020 Aug 25;8:1028 [PMID: 32984289]
  116. Bioresour Technol. 2014 Feb;154:282-9 [PMID: 24412480]
  117. Biotechnol Adv. 2020 Nov 15;44:107630 [PMID: 32919011]

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