idenMD-NRF: a ranking framework for miRNA-disease association identification.

Wenxiang Zhang, Hang Wei, Bin Liu
Author Information
  1. Wenxiang Zhang: School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China.
  2. Hang Wei: School of Computer Science and Technology, Xidian University, Xi'an, Shaanxi 710071, China.
  3. Bin Liu: School of Computer Science and Technology, Beijing Institute of Technology, Beijing, 100081, China. ORCID

Abstract

Identifying miRNA-disease associations is an important task for revealing pathogenic mechanism of complicated diseases. Different computational methods have been proposed. Although these methods obtained encouraging performance for detecting missing associations between known miRNAs and diseases, how to accurately predict associated diseases for new miRNAs is still a difficult task. In this regard, a ranking framework named idenMD-NRF is proposed for miRNA-disease association identification. idenMD-NRF treats the miRNA-disease association identification as an information retrieval task. Given a novel query miRNA, idenMD-NRF employs Learning to Rank algorithm to rank associated diseases based on high-level association features and various predictors. The experimental results on two independent test datasets indicate that idenMD-NRF is superior to other compared predictors. A user-friendly web server of idenMD-NRF predictor is freely available at http://bliulab.net/idenMD-NRF/.

Keywords

MeSH Term

Algorithms
Computational Biology
Information Storage and Retrieval
MicroRNAs

Chemicals

MicroRNAs

Word Cloud

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