Multi-dimensional variables and feature parameter selection for aboveground biomass estimation of potato based on UAV multispectral imagery.

Shanjun Luo, Xueqin Jiang, Yingbin He, Jianping Li, Weihua Jiao, Shengli Zhang, Fei Xu, Zhongcai Han, Jing Sun, Jinpeng Yang, Xiangyi Wang, Xintian Ma, Zeru Lin
Author Information
  1. Shanjun Luo: Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
  2. Xueqin Jiang: School of Remote Sensing and Information Engineering, Wuhan University, Wuhan, China.
  3. Yingbin He: Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
  4. Jianping Li: Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
  5. Weihua Jiao: Center for Agricultural and Rural Economic Research, Shandong University of Finance and Economics, Jinan, China.
  6. Shengli Zhang: Potato Science Institute, Jilin Academy of Vegetables and Flower Sciences, Changchun, China.
  7. Fei Xu: Potato Science Institute, Jilin Academy of Vegetables and Flower Sciences, Changchun, China.
  8. Zhongcai Han: Potato Science Institute, Jilin Academy of Vegetables and Flower Sciences, Changchun, China.
  9. Jing Sun: Potato Science Institute, Jilin Academy of Vegetables and Flower Sciences, Changchun, China.
  10. Jinpeng Yang: Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
  11. Xiangyi Wang: Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
  12. Xintian Ma: Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
  13. Zeru Lin: School of Economics and Management, Tiangong University, Tianjin, China.

Abstract

Aboveground biomass (AGB) is an essential assessment of plant development and guiding agricultural production management in the field. Therefore, efficient and accurate access to crop AGB information can provide a timely and precise yield estimation, which is strong evidence for securing food supply and trade. In this study, the spectral, texture, geometric, and frequency-domain variables were extracted through multispectral imagery of drones, and each variable importance for different dimensional parameter combinations was computed by three feature parameter selection methods. The selected variables from the different combinations were used to perform potato AGB estimation. The results showed that compared with no feature parameter selection, the accuracy and robustness of the AGB prediction models were significantly improved after parameter selection. The random forest based on out-of-bag (RF-OOB) method was proved to be the most effective feature selection method, and in combination with RF regression, the coefficient of determination (R) of the AGB validation model could reach 0.90, with root mean square error (RMSE), mean absolute error (MAE), and normalized RMSE (nRMSE) of 71.68 g/m, 51.27 g/m, and 11.56%, respectively. Meanwhile, the regression models of the RF-OOB method provided a good solution to the problem that high AGB values were underestimated with the variables of four dimensions. Moreover, the precision of AGB estimates was improved as the dimensionality of parameters increased. This present work can contribute to a rapid, efficient, and non-destructive means of obtaining AGB information for crops as well as provide technical support for high-throughput plant phenotypes screening.

Keywords

References

  1. Plant Methods. 2020 Nov 10;16(1):150 [PMID: 33292407]
  2. Brief Bioinform. 2012 May;13(3):292-304 [PMID: 21908865]
  3. Front Plant Sci. 2017 Jun 30;8:1111 [PMID: 28713402]
  4. Front Plant Sci. 2017 Mar 28;8:421 [PMID: 28400784]
  5. Plant Methods. 2021 Nov 12;17(1):116 [PMID: 34772413]
  6. Front Plant Sci. 2019 Feb 27;10:204 [PMID: 30873194]
  7. Plant Methods. 2019 Feb 04;15:10 [PMID: 30740136]
  8. Front Plant Sci. 2018 Jul 05;9:964 [PMID: 30026750]
  9. Sensors (Basel). 2019 Oct 12;19(20): [PMID: 31614815]

Word Cloud

Created with Highcharts 10.0.0AGBvariablesparameterselectionfeatureestimationmethodbiomassplantefficientinformationcanprovidespectraltexturegeometricfrequency-domainmultispectralimagerydifferentcombinationspotatomodelsimprovedbasedRF-OOBregressionmeanerrorRMSEparametersphenotypesAbovegroundessentialassessmentdevelopmentguidingagriculturalproductionmanagementfieldThereforeaccurateaccesscroptimelypreciseyieldstrongevidencesecuringfoodsupplytradestudyextracteddronesvariableimportancedimensionalcomputedthreemethodsselectedusedperformresultsshowedcomparedaccuracyrobustnesspredictionsignificantlyrandomforestout-of-bagprovedeffectivecombinationRFcoefficientdeterminationRvalidationmodelreach090rootsquareabsoluteMAEnormalizednRMSE7168 g/m5127 g/m1156%respectivelyMeanwhileprovidedgoodsolutionproblemhighvaluesunderestimatedfourdimensionsMoreoverprecisionestimatesdimensionalityincreasedpresentworkcontributerapidnon-destructivemeansobtainingcropswelltechnicalsupporthigh-throughputscreeningMulti-dimensionalabovegroundUAVindicatorsremotesensingindicespreference

Similar Articles

Cited By