Characterization of the complete chloroplast genome of (Euphorbiaceae), an important wild relative of the rubber tree.

Yan-Shi Hu, Hua-Sun Huang, Jin Liu
Author Information
  1. Yan-Shi Hu: Rubber Research Institute, Chinese Academy of Tropical Agriculture Science, Danzhou, China.
  2. Hua-Sun Huang: Rubber Research Institute, Chinese Academy of Tropical Agriculture Science, Danzhou, China.
  3. Jin Liu: Yunnan Institute of Tropical Crops, Xishuangbanna, China.

Abstract

belongs to the Euphorbiaceae family, an important wild relative of the rubber tree. This study sequenced, assembled, and annotated the complete chloroplast genome of . The complete chloroplast genome is 161,123 bp with a canonical quadripartite structure containing a large single-copy (LSC) region (89,109 bp), a small single-copy (SSC) region (18,376 bp), and two inverted repeat regions (IRa and IRb) (26,819 bp, each). A total of 134 genes were annotated, including 86 protein-coding genes, four pseudogenes, 36 tRNA genes, and eight rRNA genes. The 134 genes include four major groups: 'self-replication', 'photosynthesis', 'unknown function', and 'others'. A phylogenetic analysis clustered , , , and into one clade, consistent with traditional taxonomy. This study provides useful data for further studies of genus and the phylogenetic relationships of Euphorbiaceae species.

Keywords

References

  1. Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11 [PMID: 28486635]
  2. Sci Rep. 2016 Jun 24;6:28594 [PMID: 27339202]
  3. Mitochondrial DNA B Resour. 2020 May 13;5(3):2062-2064 [PMID: 33457743]
  4. Mol Biol Evol. 2013 Apr;30(4):772-80 [PMID: 23329690]
  5. Bioinformatics. 2014 May 1;30(9):1312-3 [PMID: 24451623]
  6. BMC Genomics. 2013 Feb 02;14:75 [PMID: 23375136]
  7. Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73 [PMID: 31066451]
  8. Sci Rep. 2017 Feb 02;7:41457 [PMID: 28150702]
  9. Nat Plants. 2016 May 23;2(6):16073 [PMID: 27255837]
  10. Mol Plant. 2020 Feb 3;13(2):336-350 [PMID: 31838037]
  11. Gene. 2011 Apr 15;475(2):104-12 [PMID: 21241787]
  12. Mitochondrial DNA B Resour. 2020 Jan 14;5(1):607-608 [PMID: 33366668]

Word Cloud

Created with Highcharts 10.0.0geneschloroplastgenomeEuphorbiaceaecompletephylogeneticimportantwildrelativerubbertreestudyannotatedsingle-copyregion134fouranalysisbelongsfamilysequencedassembled161123 bpcanonicalquadripartitestructurecontaininglargeLSC89109 bpsmallSSC18376 bptwoinvertedrepeatregionsIRaIRb26819 bptotalincluding86protein-codingpseudogenes36tRNAeightrRNAincludemajorgroups:'self-replication''photosynthesis''unknownfunction''others'clusteredonecladeconsistenttraditionaltaxonomyprovidesusefuldatastudiesgenusrelationshipsspeciesCharacterizationHeveapaucifloracharacterization

Similar Articles

Cited By