Arun, A., Coelho, S. M., Peters, A. F., Bourdareau, S., Pérès, L., Scornet, D., Strittmatter, M. et al. 2019. Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae. Elife 8:e43101.
Avia, K., Coelho, S. M., Montecinos, A. E., Cormier, A., Lerck, F., Mauger, S., Faugeron, S., Valero, M., Cock, J. M. & Boudry, P. 2017. High-density genetic map and identification of QTLs for responses to high temperature and low salinity stresses in the model alga Ectocarpus sp. Sci. Rep. 7:43241.
Badis, Y., Scornet, D., Harada, M., Caillard, C., Godfroy, O., Raphalen, M., Gachon, C. M. M., Coelho, S. M., Motomura, T., Nagasato, C. & Cock, J. M. 2021. Targeted CRISPR-Cas9-based gene knockouts in the model brown alga Ectocarpus. New Phytol. 231:2077-91.
Bai, F. Y., Han, D. Y., Duan, S. F. & Wang, Q. M. 2022. The ecology and evolution of the baker's yeast Saccharomyces cerevisiae. Genes 13:230.
Baudry, L., Guiglielmoni, N., Marie-Nelly, H., Cormier, A., Marbouty, M., Avia, K., Mie, Y. L. et al. 2020. instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder. Genome Biol. 21:148.
Bourdareau, S., Tirichine, L., Lombard, B., Loew, D., Scornet, D., Wu, Y., Coelho, S. M. & Cock, J. M. 2021. Histone modifications during the life cycle of the brown alga Ectocarpus. Genome Biol. 22:12.
Bourdareau, S., Godfroy, O., Gueno, J., Scornet, D., Coelho, S. M., Tirichine, L. & Cock, J. M. 2022. An efficient chromatin immunoprecipitation protocol for the analysis of histone modification distributions in the brown alga Ectocarpus. Methods Protoc. 5:36.
Bringloe, T. T., Zaparenkov, D., Starko, S., Grant, W. S., Vieira, C., Kawai, H., Hanyuda, T. et al. 2021. Whole-genome sequencing reveals forgotten lineages and recurrent hybridizations within the kelp genus Alaria (Phaeophyceae). J. Phycol. 57:1721-38.
Cock, J. M., Sterck, L., Rouzé, P., Scornet, D., Allen, A. E., Amoutzias, G., Anthouard, V. et al. 2010. The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 465:617-21.
Cormier, A., Avia, K., Sterck, L., Derrien, T., Wucher, V., Andres, G., Monsoor, M. et al. 2017. Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus. New Phytol. 214:219-32.
Couceiro, L., Le Gac, M., Hunsperger, H. M., Mauger, S., Destombe, C., Cock, J. M., Ahmed, S. et al. 2015. Evolution and maintenance of haploid-diploid life cycles in natural populations: the case of the marine brown alga Ectocarpus. Evolution 69:1808-22.
Cutter, A. D., Dey, A. & Murray, R. L. 2009. Evolution of the Caenorhabditis elegans genome. Mol. Biol. Evol. 26:1199-234.
Davis, R. H. 2004. The age of model organisms. Nat. Rev. Genet. 5:69-76.
Dittami, S., Scornet, D., Petit, J., Ségurens, B., Da Silva, C., Corre, E., Dondrup, M. et al. 2009. Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress. Genome Biol. 10:R66.
Farnham, G., Strittmatter, M., Coelho, S. M., Cock, J. M. & Brownlee, C. 2013. Gene silencing in Fucus embryos: Developmental consequences of RNAi-mediated cytoskeletal disruption. J. Phycol. 49:819-29.
Godfroy, O., Uji, T., Nagasato, C., Lipinska, A. P., Scornet, D., Peters, A. F., Avia, K. et al. 2017. DISTAG/TBCCd1 is required for basal cell fate determination in Ectocarpus. Plant Cell 29:3102-22.
Graf, L., Shin, Y., Yang, J. H., Choi, J. W., Hwang, I. K., Nelson, W., Bhattacharya, D., Viard, F. & Yoon, H. S. 2021. A genome-wide investigation of the effect of farming and human-mediated introduction on the ubiquitous seaweed Undaria pinnatifida. Nat. Ecol. Evol. 5:360-8.
Gruber, A., Rocap, G., Kroth, P. G., Armbrust, E. V. & Mock, T. 2015. Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage. Plant J. 81:519-28.
Gschloessl, B., Guermeur, Y. & Cock, J. M. 2008. HECTAR: a method to predict subcellular targeting in heterokonts. BMC Bioinformatics 9:393.
Haudry, A., Laurent, S. & Kapun, M. 2020. Population genomics on the fly: Recent advances in Drosophila. Methods Mol. Biol. 2090:357-96.
Heesch, S., Cho, G. Y., Peters, A. F., Le Corguillé, G., Falentin, C., Boutet, G., Coëdel, S. et al. 2010. A sequence-tagged genetic map for the brown alga Ectocarpus siliculosus provides large-scale assembly of the genome sequence. New Phytol. 188:42-51.
Macaisne, N., Liu, F., Scornet, D., Peters, A. F., Lipinska, A., Perrineau, M. M., Henry, A., Strittmatter, M., Coelho, S. M. & Cock, J. M. 2017. The Ectocarpus immediate upright gene encodes a member of a novel family of cysteine-rich proteins with an unusual distribution across the eukaryotes. Development 144:409-18.
Maier, I. 1995. Brown algal pheromones. In Round, F. E. & Chapman, D. J. [Eds.] Progress in Phycological Research. Biopress, Bristol, pp. 51-102.
Montecinos, A. E., Couceiro, L., Peters, A. F., Desrut, A., Valero, M. & Guillemin, M. L. 2017. Species delimitation and phylogeographic analyses in the Ectocarpus subgroup siliculosi (Ectocarpales, Phaeophyceae). J. Phycol. 53:17-31.
Müller, D. G. 1964. Life-cycle of Ectocarpus siliculosus from Naples, Italy. Nature 26:1402.
Müller, D. G. 1967. Generationswechsel, Kernphasenwechsel und Sexualität der Braunalge Ectocarpus siliculosus im Kulturversuch. Planta 75:39-54.
Müller, D. G. 1991. Mendelian segregation of a virus genome during host meiosis in the marine brown alga Ectocarpus siliculosus. J. Plant Physiol. 137:739-43.
Müller, D. G. & Eichenberger, W. 1997. Mendelian genetics in brown algae: inheritance of a lipid defect mutation and sex alleles in Ectocarpus siliculosus (Ectocarpales, Phaeophyceae). Phycologia 36:79-81.
Müller, D. G., Jaenicke, L., Donike, M. & Akintobi, T. 1971. Sex attractant in a brown alga: chemical structure. Science 171:815-7.
Peters, A. F., Marie, D., Scornet, D., Kloareg, B. & Cock, J. M. 2004. Proposal of Ectocarpus siliculosus (Ectocarpales, Phaeophyceae) as a model organism for brown algal genetics and genomics. J. Phycol. 40:1079-88.
Peters, A. F., Mann, A. D., Córdova, C. A., Brodie, J., Correa, J. A., Schroeder, D. C. & Cock, J. M. 2010. Genetic diversity of Ectocarpus (Ectocarpales, Phaeophyceae) in Peru and northern Chile, the area of origin of the genome-sequenced strain. New Phytol. 188:30-41.
Ritter, A., Dittami, S. M., Goulitquer, S., Correa, J. A., Boyen, C., Potin, P. & Tonon, T. 2014. Transcriptomic and metabolomic analysis of copper stress acclimation in Ectocarpus siliculosus highlights signaling and tolerance mechanisms in brown algae. BMC Plant Biol. 14:116.
Sterck, L., Billiau, K., Abeel, T., Rouzé, P. & Van de Peer, Y. 2012. ORCAE: Online resource for community annotation of eukaryotes. Nat. Methods 9:1041.
Takou, M., Wieters, B., Kopriva, S., Coupland, G., Linstädter, A. & De Meaux, J. 2019. Linking genes with ecological strategies in Arabidopsis thaliana. J. Exp. Bot. 70:1141-51.
Tarver, J. E., Cormier, A., Pinzón, N., Taylor, R. S., Carré, W., Strittmatter, M., Seitz, H., Coelho, S. M. & Cock, J. M. 2015. microRNAs and the evolution of complex multicellularity: Identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus. Nucl. Acids Res. 43:6384-98.
Weigel, D. 2012. Natural variation in Arabidopsis: From molecular genetics to ecological genomics. Plant Physiol. 158:2-22.