Genome-Wide Identification of GYF-Domain Encoding Genes in Three Species and Their Expression Responding to in .

Xiaobo Zhang, Lei Qin, Junxing Lu, Yunong Xia, Xianyu Tang, Xun Lu, Shitou Xia
Author Information
  1. Xiaobo Zhang: Hunan Provincial Key Laboratory of Phytohormones and Growth Development, College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China.
  2. Lei Qin: Hunan Provincial Key Laboratory of Phytohormones and Growth Development, College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China.
  3. Junxing Lu: College of Life Science, Chongqing Normal University, Chongqing 400047, China. ORCID
  4. Yunong Xia: Hunan Provincial Key Laboratory of Phytohormones and Growth Development, College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China.
  5. Xianyu Tang: Hunan Provincial Key Laboratory of Phytohormones and Growth Development, College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China.
  6. Xun Lu: Agricultural Science Academy of Xiangxi Tujia and Miao Autonomous Prefecture, Xiangxi 416000, China.
  7. Shitou Xia: Hunan Provincial Key Laboratory of Phytohormones and Growth Development, College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China. ORCID

Abstract

GYF (glycine-tyrosine-phenylalanine)-domain-containing proteins, which were reported to participate in many aspects of biological processes in yeast and animals, are highly conserved adaptor proteins existing in almost all eukaryotes. Our previous study revealed that GYF protein MUSE11/EXA1 is involved in nucleotide-binding leucine-rich repeat (NLR) receptor-mediated defense in . However, the GYF-domain encoding homologous genes are still not clear in other plants. Here, we performed genome-wide identification of () from and its parental species, and . As a result, 26 GYFs of (), 11 of (), and of () together with 10 (s) were identified, respectively. We, then, conducted gene structure, motif, cis-acting elements, duplication, chromosome localization, and phylogenetic analysis of these genes. Gene structure analysis indicated the diversity of the exon numbers of these genes. We found that the defense and stress responsiveness element existed in 23 genes and also identified 10 motifs in these GYF proteins. Chromosome localization exhibited a similar distribution of with or in their respective genomes. The phylogenetic and gene collinearity analysis showed the evolutionary conservation of among and its parental species as well as . These 61 identified GYF domain proteins can be classified into seven groups according to their sequence similarity. Expression of induced by provided five highly upregulated genes and five highly downregulated genes, which might be candidates for further research of plant-fungal interaction in .

Keywords

References

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MeSH Term

Phylogeny
Brassica napus
Brassica
Ascomycota
Arabidopsis
Genome, Plant

Word Cloud

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