ChagasDB: 80 years of publicly available data on the molecular host response to Trypanosoma cruzi infection in a single database.

Pauline Brochet, Jean-Christophe Mouren, Laurent Hannouche, Fabrice Lopez, Benoit Ballester, Edecio Cunha-Neto, Lionel Spinelli, Christophe Chevillard
Author Information
  1. Pauline Brochet: Institut National de la Santé Et de la Recherche Médicale (INSERM), Unité Mixte de Recherche (UMR)_1090, Aix Marseille Université, TAGC Theories and Approaches of Genomic Complexity, Institut MarMaRa, Marseille 13288, France.
  2. Jean-Christophe Mouren: Institut National de la Santé Et de la Recherche Médicale (INSERM), Unité Mixte de Recherche (UMR)_1090, Aix Marseille Université, TAGC Theories and Approaches of Genomic Complexity, Institut MarMaRa, Marseille 13288, France.
  3. Laurent Hannouche: C2VN, INSERM, INRA, Aix Marseille Université, Marseille 13005, France.
  4. Fabrice Lopez: Institut National de la Santé Et de la Recherche Médicale (INSERM), Unité Mixte de Recherche (UMR)_1090, Aix Marseille Université, TAGC Theories and Approaches of Genomic Complexity, Institut MarMaRa, Marseille 13288, France.
  5. Benoit Ballester: Institut National de la Santé Et de la Recherche Médicale (INSERM), Unité Mixte de Recherche (UMR)_1090, Aix Marseille Université, TAGC Theories and Approaches of Genomic Complexity, Institut MarMaRa, Marseille 13288, France. ORCID
  6. Edecio Cunha-Neto: Institut National de la Santé Et de la Recherche Médicale (INSERM), Unité Mixte de Recherche (UMR)_1090, Aix Marseille Université, TAGC Theories and Approaches of Genomic Complexity, Institut MarMaRa, Marseille 13288, France.
  7. Lionel Spinelli: Laboratory of Immunology, Heart Institute Instituto do Coração (InCor), University of São Paulo, School of Medicine, São Paulo 05403-900, Brazil.
  8. Christophe Chevillard: Institut National de la Santé Et de la Recherche Médicale (INSERM), Unité Mixte de Recherche (UMR)_1090, Aix Marseille Université, TAGC Theories and Approaches of Genomic Complexity, Institut MarMaRa, Marseille 13288, France.

Abstract

Chagas disease is a parasitical disease caused by Trypanosoma cruzi which affects ∼7 million people worldwide. Per year, ∼10 000 people die from this pathology. Indeed, ∼30% of humans develop severe chronic forms, including cardiac, digestive or neurological disorders, for which there is still no treatment. In order to facilitate research on Chagas disease, a manual curation of all papers corresponding to 'Chagas disease' referenced on PubMed has been performed. All deregulated molecules in hosts (all mammals, humans, mice or others) following T. cruzi infection were retrieved and included in a database, named ChagasDB. A website has been developed to make this database accessible to all. In this article, we detail the construction of this database, its contents and how to use it. Database URL https://chagasdb.tagc.univ-amu.fr.

References

  1. Curr Protoc Bioinformatics. 2016 Jun 20;54:1.30.1-1.30.33 [PMID: 27322403]
  2. Nucleic Acids Res. 2021 Jan 8;49(D1):D981-D987 [PMID: 33231642]
  3. Cytokine Growth Factor Rev. 2021 Dec;62:15-22 [PMID: 34696979]
  4. Nucleic Acids Res. 2019 Jan 8;47(D1):D135-D139 [PMID: 30371849]
  5. Nucleic Acids Res. 2020 Jan 8;48(D1):D731-D742 [PMID: 31713623]
  6. Nucleic Acids Res. 2021 Jan 8;49(D1):D939-D946 [PMID: 33152070]
  7. Mem Inst Oswaldo Cruz. 2009 Jul;104 Suppl 1:187-98 [PMID: 19753474]
  8. Lancet Infect Dis. 2013 Apr;13(4):342-8 [PMID: 23395248]
  9. Lancet. 2018 Jan 6;391(10115):82-94 [PMID: 28673423]
  10. Nat Protoc. 2009;4(8):1184-91 [PMID: 19617889]
  11. Nucleic Acids Res. 2019 Jan 8;47(D1):D155-D162 [PMID: 30423142]
  12. Nucleic Acids Res. 2016 Jul 8;44(W1):W83-9 [PMID: 27098042]
  13. Nucleic Acids Res. 2022 Jan 7;50(D1):D988-D995 [PMID: 34791404]
  14. Expert Opin Drug Discov. 2020 Dec;15(12):1381-1402 [PMID: 32812830]
  15. MicroPubl Biol. 2023 Apr 18;2023: [PMID: 37151216]

MeSH Term

Humans
Animals
Mice
Chagas Disease
Databases, Factual
PubMed
Mammals

Links to CNCB-NGDC Resources

Database Commons: DBC008630 (ChagasDB)

Word Cloud

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