Mechanism of Taxanes in the Treatment of Lung Cancer Based on Network Pharmacology and Molecular Docking.

Yajing Zhang, Zirui Zhao, Wenlong Li, Yuanhu Tang, Shujie Wang
Author Information
  1. Yajing Zhang: College of Biological and Agricultural Engineering, Jilin University, Changchun 130022, China.
  2. Zirui Zhao: College of Biological and Agricultural Engineering, Jilin University, Changchun 130022, China.
  3. Wenlong Li: College of Biological and Agricultural Engineering, Jilin University, Changchun 130022, China.
  4. Yuanhu Tang: College of Biological and Agricultural Engineering, Jilin University, Changchun 130022, China.
  5. Shujie Wang: College of Biological and Agricultural Engineering, Jilin University, Changchun 130022, China.

Abstract

Taxanes are natural compounds for the treatment of lung cancer, but the molecular mechanism behind the effects is unclear. In the present study, through network pharmacology and molecular docking, the mechanism of the target and pathway of taxanes in the treatment of lung cancer was studied. The taxanes targets were determined by PubChem database, and an effective compounds-targets network was constructed. The GeneCards database was used to determine the disease targets of lung cancer, and the intersection of compound targets and disease targets was obtained. The Protein-Protein Interaction (PPI) network of the intersection targets was analyzed, and the PPI network was constructed by Cytoscape 3.6.0 software. The hub targets were screened according to the degree value, and the binding activity between taxanes and hub targets was verified by molecular docking. The results showed that eight taxane-active compounds and 444 corresponding targets were screened out, and 131 intersection targets were obtained after mapping with lung cancer disease targets. The hub targets obtained by PPI analysis were TP53, EGFR, and AKT1. Gene Ontology (GO) biological function enrichment analysis obtained 1795 biological process (BP) terms, 101 cellular component (CC) terms, and 164 molecular function (MF) terms. There were 179 signaling pathways obtained by Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. Twenty signaling pathways were screened out, mainly pathways in cancer, proteoglycans in cancer pathway, microRNAs in cancer pathway, and so on. Molecular docking shows that the binding energies of eight taxanes with TP53, EGFR, and AKT1 targets were less than -8.8 kcal/mol, taxanes acts on TP53, EGFR, and AKT1 targets through pathways in cancer, proteoglycans in cancer pathway and microRNAs in cancer pathway, and plays a role in treating lung cancer in biological functions such as protein binding, enzyme binding, and identical protein binding.

Keywords

References

  1. Int J Radiat Oncol Biol Phys. 2012 Sep 1;84(1):e77-83 [PMID: 22795728]
  2. Chin J Nat Med. 2020 Dec;18(12):890-897 [PMID: 33357719]
  3. Semin Cancer Biol. 2021 Feb;69:349-364 [PMID: 32088362]
  4. Biomed Pharmacother. 2023 Apr;160:114392 [PMID: 36804123]
  5. Cell Cycle. 2020 Jan;19(2):160-162 [PMID: 31880200]
  6. Eur J Cancer Care (Engl). 2021 Jan;30(1):e13354 [PMID: 33140536]
  7. Transl Lung Cancer Res. 2019 May;8(Suppl 1):S21-S30 [PMID: 31211103]
  8. ACS Omega. 2023 Jan 31;8(6):5850-5860 [PMID: 36816658]
  9. Cancers (Basel). 2023 Jan 19;15(3): [PMID: 36765594]
  10. ACS Appl Bio Mater. 2022 May 16;5(5):2389-2402 [PMID: 35452214]
  11. Technol Cancer Res Treat. 2021 Jan-Dec;20:15330338211050775 [PMID: 34657492]
  12. Oncotarget. 2017 Apr 25;8(33):54548-54557 [PMID: 28903363]
  13. Neurorehabil Neural Repair. 2019 Oct;33(10):792-799 [PMID: 31342880]
  14. Life Sci. 2021 Jul 15;277:119397 [PMID: 33794249]
  15. Rapid Commun Mass Spectrom. 2021 Jun 15;35(13):e9107 [PMID: 33864637]
  16. Expert Opin Drug Discov. 2022 Nov;17(11):1193-1207 [PMID: 36200759]
  17. J Cancer Res Clin Oncol. 2015 Mar;141(3):431-41 [PMID: 25245053]
  18. J Thorac Cardiovasc Surg. 2022 Feb;163(2):466-467 [PMID: 33563424]
  19. Pharmaceutics. 2022 Jan 20;14(2): [PMID: 35213974]
  20. Cells. 2023 Feb 03;12(3): [PMID: 36766853]
  21. Int J Cancer. 2008 May 15;122(10):2380-4 [PMID: 18224693]
  22. Theranostics. 2018 Jun 6;8(13):3517-3529 [PMID: 30026863]
  23. Int J Mol Sci. 2023 Apr 05;24(7): [PMID: 37047766]
  24. J Thorac Dis. 2020 Mar;12(3):782-793 [PMID: 32274145]
  25. Curr Chall Thorac Surg. 2023 Feb 25;5: [PMID: 37016707]
  26. Thorac Cancer. 2022 Aug;13(16):2346-2354 [PMID: 35818294]
  27. J Comput Chem. 2010 Jan 30;31(2):455-61 [PMID: 19499576]
  28. Medicine (Baltimore). 2022 Nov 11;101(45):e31751 [PMID: 36397323]
  29. Oncologist. 2010;15(10):1102-12 [PMID: 20930102]
  30. Cancer Causes Control. 2012 Dec;23(12):1965-75 [PMID: 23065072]
  31. Pharmaceuticals (Basel). 2022 May 04;15(5): [PMID: 35631398]
  32. Trends Pharmacol Sci. 2022 Feb;43(2):136-150 [PMID: 34895945]
  33. J Natl Cancer Inst. 2022 Dec 8;114(12):1665-1673 [PMID: 36083018]
  34. Int J Clin Exp Pathol. 2015 Sep 01;8(9):11854-62 [PMID: 26617940]
  35. Support Care Cancer. 2014 Sep;22(9):2581-92 [PMID: 24952242]
  36. Biochim Biophys Acta Rev Cancer. 2022 Sep;1877(5):188789 [PMID: 36064121]
  37. Treat Respir Med. 2006;5(3):181-91 [PMID: 16696588]
  38. Saudi Pharm J. 2023 Jun;31(6):1125-1138 [PMID: 37293382]
  39. Oncogene. 2019 May;38(21):4125-4141 [PMID: 30700828]
  40. Foods. 2023 Apr 25;12(9): [PMID: 37174317]
  41. Cells. 2022 Nov 29;11(23): [PMID: 36497091]
  42. Cancer Med. 2023 Feb;12(3):2658-2665 [PMID: 36000584]

Grants

  1. No. 20180201009NY/Jilin Province Science and Technology Development Key Program
  2. No. NK15SS22/Changchun City Science and Technology Development Program
  3. No. K201101/Key Laboratory of Ministry of Education

Word Cloud

Created with Highcharts 10.0.0targetscancerpathwaylungtaxanesmolecularnetworkobtainedbindingdockingpathwaysdiseaseintersectionPPIhubscreenedanalysisTP53EGFRAKT1biologicaltermsTaxanescompoundstreatmentmechanismpharmacologytargetdatabaseconstructedeightfunctionenrichmentsignalingproteoglycansmicroRNAsMolecularproteinnaturalbehindeffectsunclearpresentstudystudieddeterminedPubChemeffectivecompounds-targetsGeneCardsuseddeterminecompoundProtein-ProteinInteractionanalyzedCytoscape360softwareaccordingdegreevalueactivityverifiedresultsshowedtaxane-active444corresponding131mappingGeneOntologyGO1795processBP101cellularcomponentCC164MF179KyotoEncyclopediaGenesGenomesKEGGTwentymainlyshowsenergiesless-88kcal/molactsplaysroletreatingfunctionsenzymeidenticalMechanismTreatmentLungCancerBasedNetworkPharmacologyDocking

Similar Articles

Cited By