Deep Learning Methodologies Applied to Digital Pathology in Prostate Cancer: A Systematic Review.
Noémie Rabilloud, Pierre Allaume, Oscar Acosta, Renaud De Crevoisier, Raphael Bourgade, Delphine Loussouarn, Nathalie Rioux-Leclercq, Zine-Eddine Khene, Romain Mathieu, Karim Bensalah, Thierry Pecot, Solene-Florence Kammerer-Jacquet
Author Information
Noémie Rabilloud: Impact TEAM, Laboratoire Traitement du Signal et de l'Image (LTSI) INSERM, Rennes University, 35033 Rennes, France.
Pierre Allaume: Department of Pathology, Rennes University Hospital, 2 rue Henri Le Guilloux, CEDEX 09, 35033 Rennes, France.
Oscar Acosta: Impact TEAM, Laboratoire Traitement du Signal et de l'Image (LTSI) INSERM, Rennes University, 35033 Rennes, France.
Renaud De Crevoisier: Impact TEAM, Laboratoire Traitement du Signal et de l'Image (LTSI) INSERM, Rennes University, 35033 Rennes, France.
Raphael Bourgade: Department of Pathology, Nantes University Hospital, 44000 Nantes, France. ORCID
Delphine Loussouarn: Department of Pathology, Nantes University Hospital, 44000 Nantes, France.
Nathalie Rioux-Leclercq: Department of Pathology, Rennes University Hospital, 2 rue Henri Le Guilloux, CEDEX 09, 35033 Rennes, France.
Zine-Eddine Khene: Impact TEAM, Laboratoire Traitement du Signal et de l'Image (LTSI) INSERM, Rennes University, 35033 Rennes, France.
Romain Mathieu: Department of Urology, Rennes University Hospital, 2 rue Henri Le Guilloux, CEDEX 09, 35033 Rennes, France.
Karim Bensalah: Department of Urology, Rennes University Hospital, 2 rue Henri Le Guilloux, CEDEX 09, 35033 Rennes, France.
Thierry Pecot: Facility for Artificial Intelligence and Image Analysis (FAIIA), Biosit UAR 3480 CNRS-US18 INSERM, Rennes University, 2 Avenue du Professeur Léon Bernard, 35042 Rennes, France.
Solene-Florence Kammerer-Jacquet: Impact TEAM, Laboratoire Traitement du Signal et de l'Image (LTSI) INSERM, Rennes University, 35033 Rennes, France.
中文译文
English
Deep learning (DL), often called artificial intelligence (AI), has been increasingly used in Pathology thanks to the use of scanners to digitize slides which allow us to visualize them on monitors and process them with AI algorithms. Many articles have focused on DL applied to prostate cancer (PCa). This systematic review explains the DL applications and their performances for PCa in digital pathology. Article research was performed using PubMed and Embase to collect relevant articles. A Risk of Bias (RoB) was assessed with an adaptation of the QUADAS-2 tool. Out of the 77 included studies, eight focused on pre-processing tasks such as quality assessment or staining normalization. Most articles ( = 53) focused on diagnosis tasks like cancer detection or Gleason grading. Fifteen articles focused on prediction tasks, such as recurrence prediction or genomic correlations. Best performances were reached for cancer detection with an Area Under the Curve (AUC) up to 0.99 with algorithms already available for routine diagnosis. A few biases outlined by the RoB analysis are often found in these articles, such as the lack of external validation. This review was registered on PROSPERO under CRD42023418661.
Lancet Oncol. 2020 Feb;21(2):222-232
[PMID: 31926806 ]
Cancers (Basel). 2022 Sep 28;14(19):
[PMID: 36230666 ]
Diagnostics (Basel). 2022 Mar 21;12(3):
[PMID: 35328321 ]
Cancers (Basel). 2021 Sep 28;13(19):
[PMID: 34638322 ]
Sci Rep. 2020 Jun 18;10(1):9911
[PMID: 32555410 ]
Eur Urol Focus. 2021 Jul;7(4):722-732
[PMID: 33941504 ]
Am J Surg Pathol. 2016 Feb;40(2):244-52
[PMID: 26492179 ]
Diagnostics (Basel). 2022 Apr 20;12(5):
[PMID: 35626187 ]
NPJ Digit Med. 2022 Jun 8;5(1):71
[PMID: 35676445 ]
Med Phys. 2020 Mar;47(3):1021-1033
[PMID: 31834623 ]
Mod Pathol. 2021 Dec;34(12):2098-2108
[PMID: 34168282 ]
Comput Biol Med. 2022 Aug;147:105714
[PMID: 35753089 ]
iScience. 2022 Jun 23;25(7):104663
[PMID: 35832894 ]
J Pathol Clin Res. 2022 May;8(3):209-216
[PMID: 35174655 ]
Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:1380-1383
[PMID: 33018246 ]
Virchows Arch. 2019 Jul;475(1):77-83
[PMID: 31098801 ]
Commun Med (Lond). 2022 Jun 8;2:64
[PMID: 35693032 ]
Med Image Anal. 2019 Dec;58:101544
[PMID: 31466046 ]
Sci Rep. 2019 Jan 29;9(1):864
[PMID: 30696866 ]
Nat Commun. 2020 Aug 3;11(1):3877
[PMID: 32747659 ]
Front Bioeng Biotechnol. 2019 Aug 23;7:198
[PMID: 31508414 ]
Eur Urol Focus. 2021 Mar;7(2):347-351
[PMID: 31767543 ]
Med Image Anal. 2021 Oct;73:102165
[PMID: 34303169 ]
IEEE Trans Med Imaging. 2021 Jul;40(7):1817-1826
[PMID: 33729928 ]
Sci Rep. 2016 May 23;6:26286
[PMID: 27212078 ]
BMC Med Imaging. 2021 May 8;21(1):77
[PMID: 33964886 ]
Cancers (Basel). 2019 Nov 25;11(12):
[PMID: 31769420 ]
J Med Imaging (Bellingham). 2018 Oct;5(4):047501
[PMID: 30840742 ]
CA Cancer J Clin. 2022 Jan;72(1):7-33
[PMID: 35020204 ]
AMIA Annu Symp Proc. 2018 Apr 16;2017:1140-1148
[PMID: 29854182 ]
IEEE Trans Pattern Anal Mach Intell. 2021 Feb;43(2):567-578
[PMID: 31442971 ]
Mod Pathol. 2021 Aug;34(8):1588-1595
[PMID: 33782551 ]
Ann Intern Med. 2011 Oct 18;155(8):529-36
[PMID: 22007046 ]
Eur Urol Focus. 2021 Sep;7(5):995-1001
[PMID: 33303404 ]
Nat Med. 2019 Aug;25(8):1301-1309
[PMID: 31308507 ]
Syst Rev. 2021 Mar 29;10(1):89
[PMID: 33781348 ]
Mod Pathol. 2022 Oct;35(10):1449-1457
[PMID: 35487950 ]
J Med Imaging (Bellingham). 2020 Sep;7(5):057501
[PMID: 33062803 ]
Entropy (Basel). 2019 Apr 02;21(4):
[PMID: 33267070 ]
Histopathology. 2019 Jul;75(1):39-53
[PMID: 30801768 ]
IEEE J Biomed Health Inform. 2020 May;24(5):1413-1426
[PMID: 31567104 ]
IEEE Trans Med Imaging. 2016 Aug;35(8):1962-71
[PMID: 27164577 ]
BMC Cancer. 2022 May 5;22(1):494
[PMID: 35513774 ]
Comput Methods Programs Biomed. 2020 Oct;195:105637
[PMID: 32653747 ]
Lancet Digit Health. 2020 Aug;2(8):e407-e416
[PMID: 33328045 ]
Arch Pathol Lab Med. 2023 Oct 1;147(10):1178-1185
[PMID: 36538386 ]
Artif Intell Med. 2021 May;115:102076
[PMID: 34001325 ]
JAMA Netw Open. 2020 May 1;3(5):e205111
[PMID: 32432709 ]
JCO Clin Cancer Inform. 2022 Feb;6:e2100131
[PMID: 35192404 ]
Sci Rep. 2020 Sep 10;10(1):14904
[PMID: 32913202 ]
Nat Med. 2021 Oct;27(10):1663-1665
[PMID: 34635854 ]
Lancet Oncol. 2020 Feb;21(2):233-241
[PMID: 31926805 ]
Sci Rep. 2020 Sep 1;10(1):14398
[PMID: 32873856 ]
EBioMedicine. 2022 Jun;80:104067
[PMID: 35644123 ]
Mod Pathol. 2020 Oct;33(10):2058-2066
[PMID: 32393768 ]
Comput Biol Med. 2023 Jun;159:106856
[PMID: 37075600 ]
IEEE Trans Med Imaging. 2019 Apr;38(4):945-954
[PMID: 30334752 ]
Front Med (Lausanne). 2019 Sep 30;6:193
[PMID: 31632974 ]
J Pathol Inform. 2019 Sep 27;10:30
[PMID: 31620309 ]
Comput Biol Med. 2021 Apr;131:104253
[PMID: 33601084 ]
JAMA Oncol. 2020 Sep 1;6(9):1372-1380
[PMID: 32701148 ]
Proc SPIE Int Soc Opt Eng. 2017 Jan;10133:
[PMID: 30828124 ]
N Biotechnol. 2023 Dec 25;78:52-67
[PMID: 37793603 ]
BJU Int. 2021 Sep;128(3):352-360
[PMID: 33706408 ]
Asian J Urol. 2019 Apr;6(2):129-136
[PMID: 31061798 ]
Med J Aust. 2022 Oct 17;217(8):424-433
[PMID: 36183329 ]
J Pathol Inform. 2016 Apr 11;7:17
[PMID: 27141322 ]
Comput Biol Med. 2022 Nov;150:106124
[PMID: 36208597 ]
NPJ Digit Med. 2019 Jun 7;2:48
[PMID: 31304394 ]
Am J Surg Pathol. 2005 Sep;29(9):1228-42
[PMID: 16096414 ]
Sensors (Basel). 2021 Oct 09;21(20):
[PMID: 34695922 ]
Nat Med. 2022 Jan;28(1):154-163
[PMID: 35027755 ]
J Pathol. 2021 Jun;254(2):147-158
[PMID: 33904171 ]
Int J Med Inform. 2021 Sep;153:104510
[PMID: 34108105 ]
Sci Rep. 2022 Mar 23;12(1):5002
[PMID: 35322056 ]
Bioinformatics. 2022 Jun 27;38(13):3462-3469
[PMID: 35595235 ]
Sci Rep. 2018 Aug 13;8(1):12054
[PMID: 30104757 ]
Annu Int Conf IEEE Eng Med Biol Soc. 2019 Jul;2019:899-903
[PMID: 31946039 ]
Comput Med Imaging Graph. 2018 Nov;69:125-133
[PMID: 30243216 ]