BQsupports: systematic assessment of the support and novelty of new biomedical associations.

Adrià Fernández-Torras, Martina Locatelli, Martino Bertoni, Patrick Aloy
Author Information
  1. Adrià Fernández-Torras: Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain.
  2. Martina Locatelli: Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain.
  3. Martino Bertoni: Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain.
  4. Patrick Aloy: Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain. ORCID

Abstract

MOTIVATION: Living a Big Data era in Biomedicine, there is an unmet need to systematically assess experimental observations in the context of available information. This assessment would offer a means for a comprehensive and robust validation of biomedical data results and provide an initial estimate of the potential novelty of the findings.
RESULTS: Here we present BQsupports, a web-based tool built upon the Bioteque biomedical descriptors that systematically analyzes and quantifies the current support to a given set of observations. The tool relies on over 1000 distinct types of biomedical descriptors, covering over 11 different biological and chemical entities, including genes, cell lines, diseases, and small molecules. By exploring hundreds of descriptors, BQsupports provide support scores for each observation across a wide variety of biomedical contexts. These scores are then aggregated to summarize the biomedical support of the assessed dataset as a whole. Finally, the BQsupports also suggests predictive features of the given dataset, which can be exploited in downstream machine learning applications.
AVAILABILITY AND IMPLEMENTATION: The web application and underlying data are available online (https://bqsupports.irbbarcelona.org).

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MeSH Term

Software
Machine Learning
Big Data

Word Cloud

Created with Highcharts 10.0.0biomedicalsupportBQsupportsdescriptorssystematicallyobservationsavailableassessmentdataprovidenoveltytoolgivenscoresdatasetMOTIVATION:LivingBigDataeraBiomedicineunmetneedassessexperimentalcontextinformationoffermeanscomprehensiverobustvalidationresultsinitialestimatepotentialfindingsRESULTS:presentweb-basedbuiltuponBiotequeanalyzesquantifiescurrentsetrelies1000distincttypescovering11differentbiologicalchemicalentitiesincludinggenescelllinesdiseasessmallmoleculesexploringhundredsobservationacrosswidevarietycontextsaggregatedsummarizeassessedwholeFinallyalsosuggestspredictivefeaturescanexploiteddownstreammachinelearningapplicationsAVAILABILITYANDIMPLEMENTATION:webapplicationunderlyingonlinehttps://bqsupportsirbbarcelonaorgBQsupports:systematicnewassociations

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