Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people.

Roderic Page
Author Information
  1. Roderic Page: University of Glasgow, Glasgow, United Kingdom University of Glasgow Glasgow United Kingdom. ORCID

Abstract

A major gap in the biodiversity knowledge graph is a connection between taxonomic names and the taxonomic literature. While both names and publications often have persistent identifiers (PIDs), such as Life Science Identifiers (LSIDs) or Digital Object Identifiers (DOIs), LSIDs for names are rarely linked to DOIs for publications. This article describes efforts to make those connections across three large taxonomic databases: Index Fungorum, International Plant Names Index (IPNI) and the Index of Organism Names (ION). Over a million names have been matched to DOIs or other persistent identifiers for taxonomic publications. This represents approximately 36% of names for which publication data are available. The mappings between LSIDs and publication PIDs are made available through ChecklistBank. Applications of this mapping are discussed, including a web app to locate the citation of a taxonomic name and a knowledge graph that uses data on researcher ORCID ids to connect taxonomic names and publications to authors of those names.

Keywords

References

  1. BMC Res Notes. 2009 Mar 30;2:53 [PMID: 19331688]
  2. Science. 2009 Jun 26;324(5935):1632-3 [PMID: 19556479]
  3. MycoKeys. 2021 Sep 27;83:161-180 [PMID: 34703360]
  4. Nucleic Acids Res. 2019 Jan 8;47(D1):D259-D264 [PMID: 30371820]
  5. PeerJ. 2013 Oct 29;1:e190 [PMID: 24244913]
  6. R Soc Open Sci. 2021 Feb 10;8(2):201617 [PMID: 33972859]
  7. BMC Bioinformatics. 2013;14 Suppl 14:S5 [PMID: 24266891]
  8. Zookeys. 2016 Jan 07;(550):233-46 [PMID: 26877662]
  9. Nature. 2012 Sep 6;489(7414):5-6 [PMID: 22955582]
  10. PeerJ. 2022 Jul 7;10:e13712 [PMID: 35821898]
  11. IMA Fungus. 2013 Dec;4(2):371-9 [PMID: 24563843]
  12. OMICS. 2003 Spring;7(1):31-3 [PMID: 12831553]
  13. Brief Bioinform. 2004 Mar;5(1):59-70 [PMID: 15153306]
  14. Biodivers Data J. 2018 Jul 23;(6):e27539 [PMID: 30065607]
  15. Database (Oxford). 2018 Jan 1;2018: [PMID: 29315357]
  16. Science. 2017 May 19;356(6339):691-692 [PMID: 28522483]
  17. Drug Discov Today. 2005 Nov 15;10(22):1566-72 [PMID: 16257380]
  18. Zookeys. 2011;(150):151-66 [PMID: 22207811]

Word Cloud

Created with Highcharts 10.0.0taxonomicnamespublicationspersistentidentifiersknowledgegraphLSIDsDOIsIndexdatabiodiversityPIDsIdentifierslinkedNamesmillionpublicationavailableORCIDmajorgapconnectionliteratureoftenLifeScienceDigitalObjectrarelyarticledescribeseffortsmakeconnectionsacrossthreelargedatabases:FungorumInternationalPlantIPNIOrganismIONmatchedrepresentsapproximately36%mappingsmadeChecklistBankApplicationsmappingdiscussedincludingwebapplocatecitationnameusesresearcheridsconnectauthorsTenyearslinks:buildinggloballibraryconnectingpeopleDOILSIDdatabases

Similar Articles

Cited By