Transcriptome Analyses Reveal Expression Profiles of Morphologically Undifferentiated and Differentiated Gonads of Yangtze Sturgeon .

Rui Ruan, Ying Li, Huamei Yue, Huan Ye, Jiali Jin, Jinping Wu, Hao Du, Chuangju Li
Author Information
  1. Rui Ruan: Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Affairs of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan 430223, China.
  2. Ying Li: Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Affairs of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan 430223, China.
  3. Huamei Yue: Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Affairs of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan 430223, China.
  4. Huan Ye: Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Affairs of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan 430223, China.
  5. Jiali Jin: Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Affairs of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan 430223, China.
  6. Jinping Wu: Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Affairs of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan 430223, China.
  7. Hao Du: Laboratory of Freshwater Fish Germplasm Resources and Biotechnology, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan 430223, China. ORCID
  8. Chuangju Li: Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Affairs of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan 430223, China.

Abstract

Sturgeon is known as a primitive fish with the ZZ/ZW sex determination system and is highly prized for its valuable caviar. Exploring the molecular mechanisms underlying gonadal differentiation would contribute to broadening our knowledge on the genetic regulation of sex differentiation of fish, enabling improved artificial breeding and management of sturgeons. However, the mechanisms are still poorly understood in sturgeons. This study aimed to profile expression patterns between female and male gonads at morphologically undifferentiated and early differentiated stages and identify vital genes involved in gonadal sex differentiation of sturgeons. The sexes of Yangtze sturgeon () juveniles were identified via the sex-specific DNA marker and histological observation. Transcriptome analyses were carried out on female and male gonads at 30, 80 and 180 days post-hatching. The results showed that there was a total of 17 overlapped DEGs in the comparison groups of between female and male gonads at the three developmental stages, in which there were three DEGs related to ovarian steroidogenesis, including , and . The three DEGs were highly expressed in the female gonads, of which the expression levels were gradually increased with the number of days after hatching. No well-known testis-related genes were found in the overlapped DEGs. Additionally, the expression levels of and mRNA were decreased with the knockdown of mRNA via siRNA. The results further suggested that should play a crucial role in the ovarian differentiation of sturgeons. In conclusion, this study showed that more genes involved in ovarian development than testis development emerged with sexually dimorphic expression during early gonadal sex differentiation, and it provided a preliminary understanding of the molecular regulation on gonadal differentiation of sturgeons.

Keywords

References

  1. Data Brief. 2020 May 22;31:105741 [PMID: 32529009]
  2. Sci Adv. 2021 Aug 18;7(34): [PMID: 34407945]
  3. Dev Dyn. 2007 Aug;236(8):2198-206 [PMID: 17584856]
  4. Biochem Biophys Res Commun. 2004 Jul 16;320(1):83-9 [PMID: 15207705]
  5. J Fish Biol. 2017 Mar;90(3):1104-1111 [PMID: 27885666]
  6. Anim Reprod Sci. 2019 Jan;200:75-85 [PMID: 30522703]
  7. Sci Data. 2019 Jun 13;6(1):87 [PMID: 31197171]
  8. Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2469-74 [PMID: 18268317]
  9. Nat Ecol Evol. 2020 Jun;4(6):841-852 [PMID: 32231327]
  10. PLoS One. 2014 Dec 15;9(12):e115251 [PMID: 25506840]
  11. Fish Physiol Biochem. 2013 Feb;39(1):91-4 [PMID: 22688449]
  12. BMC Genomics. 2009 Apr 29;10:203 [PMID: 19402907]
  13. Theriogenology. 2017 May;94:37-47 [PMID: 28407859]
  14. Front Genet. 2019 Sep 05;10:776 [PMID: 31543900]
  15. PeerJ. 2018 Jul 27;6:e5389 [PMID: 30065900]
  16. Front Zool. 2020 Apr 09;17:11 [PMID: 32308726]
  17. Nat Genet. 2014 Mar;46(3):253-60 [PMID: 24487278]
  18. Mol Endocrinol. 2007 Mar;21(3):712-25 [PMID: 17192407]
  19. Philos Trans R Soc Lond B Biol Sci. 2021 Aug 30;376(1832):20200089 [PMID: 34247507]
  20. Mol Reprod Dev. 2019 Feb;86(2):132-144 [PMID: 30303593]
  21. Nature. 2002 May 30;417(6888):559-63 [PMID: 12037570]
  22. Nat Biotechnol. 2011 May 15;29(7):644-52 [PMID: 21572440]
  23. Gen Comp Endocrinol. 2017 May 1;245:36-43 [PMID: 27497707]
  24. Genome Biol. 2014;15(12):550 [PMID: 25516281]
  25. Genome Biol. 2014 Jul 26;15(7):410 [PMID: 25063469]
  26. Genet Mol Res. 2015 Dec 29;14(4):18913-27 [PMID: 26782541]
  27. Physiol Genomics. 2016 Jul 1;48(7):464-76 [PMID: 27199458]
  28. Sci Data. 2023 Feb 23;10(1):105 [PMID: 36823216]
  29. Chromosome Res. 2008;16(5):801-11 [PMID: 18607761]
  30. Fish Physiol Biochem. 2017 Dec;43(6):1557-1569 [PMID: 28963671]
  31. Gene. 2016 Aug 15;588(1):54-61 [PMID: 27102893]
  32. Mar Biotechnol (NY). 2022 Mar;24(1):136-150 [PMID: 35099661]
  33. Biochem Biophys Res Commun. 2006 May 26;344(1):353-61 [PMID: 16630569]
  34. Mol Biol Evol. 2021 Apr 13;38(4):1595-1607 [PMID: 33331879]
  35. PLoS One. 2015 Sep 11;10(9):e0137450 [PMID: 26359664]
  36. Proc Biol Sci. 2022 Mar 30;289(1971):20212645 [PMID: 35291838]
  37. Gene. 2021 Jan 5;764:145093 [PMID: 32866588]
  38. J Fish Biol. 2016 Feb;88(2):567-79 [PMID: 26706998]
  39. Int J Mol Sci. 2022 Aug 22;23(16): [PMID: 36012734]
  40. Genomics. 2021 Nov;113(6):4237-4244 [PMID: 34785350]
  41. BMC Genomics. 2023 Apr 6;24(1):183 [PMID: 37024792]
  42. BMC Bioinformatics. 2011 Aug 04;12:323 [PMID: 21816040]
  43. Int J Genomics. 2018 Mar 29;2018:7835637 [PMID: 29785396]
  44. PLoS One. 2015 Jun 01;10(6):e0127332 [PMID: 26030930]
  45. BMC Genomics. 2013 Jun 18;14:407 [PMID: 23773438]
  46. Fish Physiol Biochem. 2015 Dec;41(6):1419-33 [PMID: 26159319]
  47. Genetics. 2012 May;191(1):163-70 [PMID: 22367037]
  48. Mol Reprod Dev. 2012 Aug;79(8):504-16 [PMID: 22618959]
  49. Chromosoma. 2007 Oct;116(5):463-70 [PMID: 17882464]
  50. Reprod Fertil Dev. 2019 Oct;31(11):1742-1752 [PMID: 31537253]
  51. Sci China Life Sci. 2022 Jun;65(6):1091-1122 [PMID: 35583710]
  52. J Clin Endocrinol Metab. 2012 Nov;97(11):4228-35 [PMID: 22969138]
  53. Biol Reprod. 2008 Feb;78(2):333-41 [PMID: 17942796]
  54. Zoolog Sci. 2003 Feb;20(2):159-61 [PMID: 12655179]
  55. Genetica. 2010 Jul;138(7):745-56 [PMID: 20386959]
  56. Comp Biochem Physiol Part D Genomics Proteomics. 2016 Jun;18:54-61 [PMID: 27089517]

Grants

  1. 31702395/National Natural Science Foundation of China
  2. 2018YFD0900200/National Key R&D Program of China
  3. 2023TD23, 2023TD08/Central Public-interest Scientific Institution Basal Research Fund, CAFS

MeSH Term

Animals
Female
Male
Gonads
Fishes
Testis
Gene Expression Profiling
RNA, Messenger

Chemicals

RNA, Messenger

Word Cloud

Created with Highcharts 10.0.0differentiationgonadalsturgeonssexexpressionfemalegonadsDEGsmalegenesYangtzethreeovarianSturgeonfishhighlymolecularmechanismsregulationstudyearlystagesinvolvedsturgeonviaTranscriptomeanalysesdaysresultsshowedoverlappedlevelsmRNAdevelopmentknownprimitiveZZ/ZWdeterminationsystemprizedvaluablecaviarExploringunderlyingcontributebroadeningknowledgegeneticenablingimprovedartificialbreedingmanagementHoweverstillpoorlyunderstoodaimedprofilepatternsmorphologicallyundifferentiateddifferentiatedidentifyvitalsexesjuvenilesidentifiedsex-specificDNAmarkerhistologicalobservationcarried3080180post-hatchingtotal17comparisongroupsdevelopmentalrelatedsteroidogenesisincludingexpressedgraduallyincreasednumberhatchingwell-knowntestis-relatedfoundAdditionallydecreasedknockdownsiRNAsuggestedplaycrucialroleconclusiontestisemergedsexuallydimorphicprovidedpreliminaryunderstandingAnalysesRevealExpressionProfilesMorphologicallyUndifferentiatedDifferentiatedGonadsfoxl2transcriptome

Similar Articles

Cited By

No available data.