Genetic Architecture of Abdominal Fat Deposition Revealed by a Genome-Wide Association Study in the Laying Chicken.

Jun Guo, Liang Qu, Dan Shao, Qiang Wang, Yongfeng Li, Taocun Dou, Xingguo Wang, Yuping Hu, Haibing Tong
Author Information
  1. Jun Guo: Jiangsu Institute of Poultry Science, Yangzhou 225125, China. ORCID
  2. Liang Qu: Jiangsu Institute of Poultry Science, Yangzhou 225125, China.
  3. Dan Shao: Jiangsu Institute of Poultry Science, Yangzhou 225125, China. ORCID
  4. Qiang Wang: Jiangsu Institute of Poultry Science, Yangzhou 225125, China.
  5. Yongfeng Li: Jiangsu Institute of Poultry Science, Yangzhou 225125, China.
  6. Taocun Dou: Jiangsu Institute of Poultry Science, Yangzhou 225125, China.
  7. Xingguo Wang: Jiangsu Institute of Poultry Science, Yangzhou 225125, China.
  8. Yuping Hu: Jiangsu Institute of Poultry Science, Yangzhou 225125, China.
  9. Haibing Tong: Jiangsu Institute of Poultry Science, Yangzhou 225125, China.

Abstract

Fat has a high energy density, and excessive fatness has been recognized as a problem for egg production and the welfare of chickens. The identification of a genetic polymorphism controlling fat deposition would be helpful to select against excessive fatness in the laying hen. This study aimed to estimate genomic heritability and identify the genetic architecture of abdominal fat deposition in a population of chickens from a Dongxiang blue-shelled local breed crossbred with the White Leghorn. A genome-wide association study was conducted on abdominal fat percentage, egg production and body weights using a sample of 1534 hens genotyped with a 600 K Chicken Genotyping Array. The analysis yielded a heritability estimate of 0.19 �� 0.04 for abdominal fat percentage; 0.56 �� 0.04 for body weight at 72 weeks; 0.11 �� 0.03 for egg production; and 0.24 �� 0.04 for body weight gain. The genetic correlation of abdominal fat percentage with egg production between 60 and 72 weeks of age was -0.35 �� 0.18. This implies a potential trade-off between these two traits related to the allocation of resources. Strong positive genetic correlations were found between fat deposition and weight traits. A promising locus close to on chromosome 3, associated with abdominal fat percent, was found in the present study. Another region located around on chromosome 1, where allele substitution was predicted to be associated with body weight gain, accounted for 2.9% of phenotypic variance. Another region located on chromosome 1, but close to , was associated with egg production. These results may be used to influence the balanced genetic selection for laying hens.

Keywords

References

  1. Poult Sci. 2020 May;99(5):2349-2361 [PMID: 32359570]
  2. Am J Hum Genet. 2007 Nov;81(5):1084-97 [PMID: 17924348]
  3. BMC Genomics. 2013 Jan 28;14:59 [PMID: 23356797]
  4. Genes (Basel). 2021 Dec 21;13(1): [PMID: 35052342]
  5. Sci Rep. 2021 Feb 25;11(1):4622 [PMID: 33633287]
  6. Science. 2002 Jun 21;296(5576):2225-9 [PMID: 12029063]
  7. Poult Sci. 2021 Feb;100(2):461-466 [PMID: 33518097]
  8. Am J Hum Genet. 2011 Jan 7;88(1):76-82 [PMID: 21167468]
  9. Poult Sci. 1985 Jul;64(7):1257-63 [PMID: 4022901]
  10. Bioinformatics. 2005 Jan 15;21(2):263-5 [PMID: 15297300]
  11. Anim Genet. 2020 Oct;51(5):741-751 [PMID: 32720725]
  12. PLoS Genet. 2006 Mar;2(3):e41 [PMID: 16565746]
  13. Genet Res (Camb). 2011 Feb;93(1):47-64 [PMID: 21226974]
  14. Front Genet. 2021 Aug 11;12:698163 [PMID: 34456973]
  15. BMC Genomics. 2021 May 17;22(1):354 [PMID: 34001004]
  16. Poult Sci. 2021 Jul;100(7):101110 [PMID: 34102485]
  17. BMC Genomics. 2013 Jul 08;14:458 [PMID: 23834466]
  18. PLoS One. 2012;7(2):e30910 [PMID: 22359555]
  19. Genet Epidemiol. 2008 May;32(4):361-9 [PMID: 18271029]
  20. Nat Genet. 2012 Jun 17;44(7):821-4 [PMID: 22706312]
  21. Poult Sci. 2013 Jun;92(6):1486-91 [PMID: 23687143]
  22. Nat Genet. 2016 Jul;48(7):709-17 [PMID: 27182965]
  23. Poult Sci. 1991 Apr;70(4):719-25 [PMID: 1876548]
  24. BMC Genet. 2019 Nov 6;20(1):83 [PMID: 31694549]
  25. Poult Sci. 1985 Jun;64(6):1045-9 [PMID: 4011546]
  26. Sci Rep. 2016 Dec 01;6:38096 [PMID: 27905513]
  27. Genet Sel Evol. 2021 Sep 8;53(1):70 [PMID: 34496773]
  28. Pharmacol Biochem Behav. 2010 Nov;97(1):84-91 [PMID: 20837046]
  29. BMC Genet. 2020 May 20;21(1):54 [PMID: 32434464]
  30. Cytogenet Genome Res. 2007;117(1-4):305-12 [PMID: 17675872]
  31. Am J Hum Genet. 2007 Sep;81(3):559-75 [PMID: 17701901]
  32. BMC Genomics. 2015 Oct 05;16:746 [PMID: 26438435]
  33. Sci Rep. 2015 Nov 10;5:16387 [PMID: 26552583]
  34. Int J Mol Sci. 2019 Oct 02;20(19): [PMID: 31581657]
  35. Poult Sci. 2004 Apr;83(4):521-5 [PMID: 15109049]
  36. Trop Anim Health Prod. 2023 Mar 16;55(2):117 [PMID: 36928332]
  37. BMC Genomics. 2014 Jan 24;15:62 [PMID: 24456127]
  38. Genet Sel Evol. 2017 Feb 3;49(1):18 [PMID: 28158968]
  39. J Anim Breed Genet. 2014 Jun;131(3):173-82 [PMID: 24628796]
  40. Front Genet. 2022 Aug 24;13:923766 [PMID: 36092884]

MeSH Term

Animals
Female
Genome-Wide Association Study
Chickens
Quantitative Trait Loci
Polymorphism, Single Nucleotide
Weight Gain

Word Cloud

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