Integrating wastewater and randomised prevalence survey data for national COVID surveillance.

Guangquan Li, Peter Diggle, Marta Blangiardo
Author Information
  1. Guangquan Li: Applied Statistics Research Group, Department of Mathematics, Physics and Electrical Engineering, Northumbria University, Newcastle upon Tyne, NE1 8ST, UK. guangquan.li@northumbria.ac.uk.
  2. Peter Diggle: Lancaster University, Lancaster, LA1 4YW, UK.
  3. Marta Blangiardo: MRC Centre for Environment and Health, Imperial College London, St Mary's Campus, Norfolk Place, London, W2 1PG, UK.

Abstract

During the COVID-19 pandemic, studies in a number of countries have shown how wastewater can be used as an efficient surveillance tool to detect outbreaks at much lower cost than traditional prevalence surveys. In this study, we consider the utilisation of wastewater data in the post-pandemic setting, in which collection of health data via national randomised prevalence surveys will likely be run at a reduced scale; hence an affordable ongoing surveillance system will need to combine sparse prevalence data with non-traditional disease metrics such as wastewater measurements in order to estimate disease progression in a cost-effective manner. Here, we use data collected during the pandemic to model the dynamic relationship between spatially granular wastewater viral load and disease prevalence. We then use this relationship to nowcast local disease prevalence under the scenario that (i) spatially granular wastewater data continue to be collected; (ii) direct measurements of prevalence are only available at a coarser spatial resolution, for example at national or regional scale. The results from our cross-validation study demonstrate the added value of wastewater data in improving nowcast accuracy and reducing nowcast uncertainty. Our results also highlight the importance of incorporating prevalence data at a coarser spatial scale when nowcasting prevalence at fine spatial resolution, calling for the need to maintain some form of reduced-scale national prevalence surveys in non-epidemic periods. The model framework is disease-agnostic and could therefore be adapted to different diseases and incorporated into a multiplex surveillance system for early detection of emerging local outbreaks.

References

  1. Proc Natl Acad Sci U S A. 2022 Feb 8;119(6): [PMID: 35115406]
  2. Nat Biotechnol. 2022 Dec;40(12):1814-1822 [PMID: 35851376]
  3. Sci Total Environ. 2022 Jun 25;827:154235 [PMID: 35245552]
  4. Nat Microbiol. 2022 Jan;7(1):97-107 [PMID: 34972825]
  5. Sci Total Environ. 2022 Jan 15;804:150060 [PMID: 34798721]
  6. Sci Total Environ. 2021 Jul 15;778:146294 [PMID: 33714094]
  7. Lancet Reg Health Eur. 2022 Apr;15:100322 [PMID: 35187517]
  8. J Water Health. 2022 Jul;20(7):1038-1050 [PMID: 35902986]
  9. J Water Health. 2022 Feb;20(2):287-299 [PMID: 36366987]
  10. Wellcome Open Res. 2020 Aug 25;5:200 [PMID: 33997297]
  11. Nature. 2020 May;581(7809):465-469 [PMID: 32235945]
  12. PLoS One. 2022 Jun 17;17(6):e0270168 [PMID: 35714109]
  13. Stat Methods Med Res. 1999 Mar;8(1):3-15 [PMID: 10347857]
  14. Water Res. 2023 Mar 1;231:119617 [PMID: 36682239]
  15. Environ Int. 2020 Jun;139:105689 [PMID: 32283358]
  16. Water Res. 2021 Sep 1;202:117400 [PMID: 34274898]
  17. Environ Int. 2023 Feb;172:107765 [PMID: 36709674]
  18. Nat Commun. 2022 Jul 25;13(1):4313 [PMID: 35879277]

Grants

  1. MR/S019669/1/Medical Research Council

MeSH Term

Humans
COVID-19
Pandemics
Prevalence
Wastewater
Benchmarking

Chemicals

Wastewater

Word Cloud

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