Online trend estimation and detection of trend deviations in sub-sewershed time series of SARS-CoV-2 RNA measured in wastewater.

Katherine B Ensor, Julia C Schedler, Thomas Sun, Rebecca Schneider, Anthony Mulenga, Jingjing Wu, Lauren B Stadler, Loren Hopkins
Author Information
  1. Katherine B Ensor: Department of Statistics, Rice University, 6100 Main St., Houston, TX, 77005, USA. ensor@rice.edu.
  2. Julia C Schedler: Department of Statistics, Rice University, 6100 Main St., Houston, TX, 77005, USA.
  3. Thomas Sun: Department of Statistics, Rice University, 6100 Main St., Houston, TX, 77005, USA.
  4. Rebecca Schneider: Houston Health Department, 8000 N. Stadium Dr., Houston, TX, 77054, USA.
  5. Anthony Mulenga: Houston Health Department, 8000 N. Stadium Dr., Houston, TX, 77054, USA.
  6. Jingjing Wu: Department of Civil and Environment Engineering, Rice University, 6100 Main St, Houston, TX, 77005, USA.
  7. Lauren B Stadler: Department of Civil and Environment Engineering, Rice University, 6100 Main St, Houston, TX, 77005, USA.
  8. Loren Hopkins: Houston Health Department and Department of Statistics, Rice University, 6100 Main St., Houston, TX, 77005, USA.

Abstract

Wastewater surveillance has proven a cost-effective key public health tool to understand a wide range of community health diseases and has been a strong source of information on community levels and spread for health departments throughout the SARS- CoV-2 pandemic. Studies spanning the globe demonstrate the strong association between virus levels observed in wastewater and quality clinical case information of the population served by the sewershed. Few of these studies incorporate the temporal dependence present in sampling over time, which can lead to estimation issues which in turn impact conclusions. We contribute to the literature for this important public health science by putting forward time series methods coupled with statistical process control that (1) capture the evolving trend of a disease in the population; (2) separate the uncertainty in the population disease trend from the uncertainty due to sampling and measurement; and (3) support comparison of sub-sewershed population disease dynamics with those of the population represented by the larger downstream treatment plant. Our statistical methods incorporate the fact that measurements are over time, ensuring correct statistical conclusions. We provide a retrospective example of how sub-sewersheds virus levels compare to the upstream wastewater treatment plant virus levels. An on-line algorithm supports real-time statistical assessment of deviations of virus level in a population represented by a sub-sewershed to the virus level in the corresponding larger downstream wastewater treatment plant. This information supports public health decisions by spotlighting segments of the population where outbreaks may be occurring.

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Grants

  1. U01 CK000557/NCEZID CDC HHS
  2. U01CK000557/ACL HHS
  3. ELC-ED grant no. 6NU50CK000557-01-05/CDC HHS

MeSH Term

Humans
Time Factors
Wastewater
RNA, Viral
SARS-CoV-2
Retrospective Studies
COVID-19
Wastewater-Based Epidemiological Monitoring

Chemicals

Wastewater
RNA, Viral

Word Cloud

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