Molecular factors determining brightness in fluorescence-encoded infrared vibrational spectroscopy.

Abhirup Guha, Lukas Whaley-Mayda, Seung Yeon Lee, Andrei Tokmakoff
Author Information
  1. Abhirup Guha: Department of Chemistry, James Franck Institute, and Institute of Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA. ORCID
  2. Lukas Whaley-Mayda: Department of Chemistry, James Franck Institute, and Institute of Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA. ORCID
  3. Seung Yeon Lee: Department of Chemistry, James Franck Institute, and Institute of Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA. ORCID
  4. Andrei Tokmakoff: Department of Chemistry, James Franck Institute, and Institute of Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA. ORCID

Abstract

Fluorescence-encoded infrared (FEIR) spectroscopy is a recently developed technique for solution-phase vibrational spectroscopy with detection sensitivity at the single-molecule level. While its spectroscopic information content and important criteria for its practical experimental optimization have been identified, a general understanding of the electronic and nuclear properties required for highly sensitive detection, i.e., what makes a molecule a "good FEIR chromophore," is lacking. This work explores the molecular factors that determine FEIR vibrational activity and assesses computational approaches for its prediction. We employ density functional theory (DFT) and its time-dependent version (TD-DFT) to compute vibrational and electronic transition dipole moments, their relative orientation, and the Franck-Condon factors involved in FEIR activity. We apply these methods to compute the FEIR activities of normal modes of chromophores from the coumarin family and compare these predictions with experimental FEIR cross sections. We discuss the extent to which we can use computational models to predict the FEIR activity of individual vibrations in a candidate molecule. The results discussed in this work provide the groundwork for computational strategies for choosing FEIR vibrational probes or informing the structure of designer chromophores for single-molecule spectroscopic applications.

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