Automation of systematic reviews of biomedical literature: a scoping review of studies indexed in PubMed.

Barbara T��th, L��szl�� Berek, L��szl�� Gul��csi, M��rta P��ntek, Zsombor Zrubka
Author Information
  1. Barbara T��th: Doctoral School of Innovation Management, ��buda University, B��csi ��t 96/B, Budapest, 1034, Hungary. ORCID
  2. L��szl�� Berek: Doctoral School for Safety and Security, ��buda University, B��csi ��t 96/B, Budapest, 1034, Hungary. ORCID
  3. L��szl�� Gul��csi: HECON Health Economics Research Center, University Research, and Innovation Center, ��buda University, B��csi ��t 96/B, Budapest, 1034, Hungary. ORCID
  4. M��rta P��ntek: HECON Health Economics Research Center, University Research, and Innovation Center, ��buda University, B��csi ��t 96/B, Budapest, 1034, Hungary. ORCID
  5. Zsombor Zrubka: HECON Health Economics Research Center, University Research, and Innovation Center, ��buda University, B��csi ��t 96/B, Budapest, 1034, Hungary. zrubka.zsombor@uni-obuda.hu. ORCID

Abstract

BACKGROUND: The demand for high-quality systematic literature reviews (SRs) for evidence-based medical decision-making is growing. SRs are costly and require the scarce resource of highly skilled reviewers. Automation technology has been proposed to save workload and expedite the SR workflow. We aimed to provide a comprehensive overview of SR automation studies indexed in PubMed, focusing on the applicability of these technologies in real world practice.
METHODS: In November 2022, we extracted, combined, and ran an integrated PubMed search for SRs on SR automation. Full-text English peer-reviewed articles were included if they reported studies on SR automation methods (SSAM), or automated SRs (ASR). Bibliographic analyses and knowledge-discovery studies were excluded. Record screening was performed by single reviewers, and the selection of full text papers was performed in duplicate. We summarized the publication details, automated review stages, automation goals, applied tools, data sources, methods, results, and Google Scholar citations of SR automation studies.
RESULTS: From 5321 records screened by title and abstract, we included 123 full text articles, of which 108 were SSAM and 15 ASR. Automation was applied for search (19/123, 15.4%), record screening (89/123, 72.4%), full-text selection (6/123, 4.9%), data extraction (13/123, 10.6%), risk of bias assessment (9/123, 7.3%), evidence synthesis (2/123, 1.6%), assessment of evidence quality (2/123, 1.6%), and reporting (2/123, 1.6%). Multiple SR stages were automated by 11 (8.9%) studies. The performance of automated record screening varied largely across SR topics. In published ASR, we found examples of automated search, record screening, full-text selection, and data extraction. In some ASRs, automation fully complemented manual reviews to increase sensitivity rather than to save workload. Reporting of automation details was often incomplete in ASRs.
CONCLUSIONS: Automation techniques are being developed for all SR stages, but with limited real-world adoption. Most SR automation tools target single SR stages, with modest time savings for the entire SR process and varying sensitivity and specificity across studies. Therefore, the real-world benefits of SR automation remain uncertain. Standardizing the terminology, reporting, and metrics of study reports could enhance the adoption of SR automation techniques in real-world practice.

Keywords

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Grants

  1. TKP2021-NKTA-36/Nemzeti Kutat��si, Fejleszt��si ��s Innovaci��s Alap
  2. TKP2021-NKTA-36/Nemzeti Kutat��si, Fejleszt��si ��s Innovaci��s Alap
  3. TKP2021-NKTA-36/Nemzeti Kutat��si, Fejleszt��si ��s Innovaci��s Alap
  4. TKP2021-NKTA-36/Nemzeti Kutat��si, Fejleszt��si ��s Innovaci��s Alap
  5. TKP2021-NKTA-36/Nemzeti Kutat��si, Fejleszt��si ��s Innovaci��s Alap

MeSH Term

Humans
Automation
PubMed
Systematic Reviews as Topic

Word Cloud

Created with Highcharts 10.0.0SRautomationstudiesAutomationautomatedSRsscreeningstages6%reviewsPubMedsearchASRselectionreviewdatarecord2/1231real-worldsystematicliteraturereviewerssaveworkloadindexedpracticearticlesincludedmethodsSSAMperformedsinglefulltextdetailsappliedtools154%full-text9%extractionassessmentevidencesynthesisreportingacrossASRssensitivitytechniquesadoptionBACKGROUND:demandhigh-qualityevidence-basedmedicaldecision-makinggrowingcostlyrequirescarceresourcehighlyskilledtechnologyproposedexpediteworkflowaimedprovidecomprehensiveoverviewfocusingapplicabilitytechnologiesrealworldMETHODS:November2022extractedcombinedranintegratedFull-textEnglishpeer-reviewedreportedBibliographicanalysesknowledge-discoveryexcludedRecordpapersduplicatesummarizedpublicationgoalssourcesresultsGoogleScholarcitationsRESULTS:5321recordsscreenedtitleabstract12310819/12389/123726/123413/12310riskbias9/12373%qualityMultiple118performancevariedlargelytopicspublishedfoundexamplesfullycomplementedmanualincreaseratherReportingoftenincompleteCONCLUSIONS:developedlimitedtargetmodesttimesavingsentireprocessvaryingspecificityThereforebenefitsremainuncertainStandardizingterminologymetricsstudyreportsenhancebiomedicalliterature:scopingArtificialintelligenceEvidenceMachinelearningNaturallanguageprocessingSystematicTextmining

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