Cryptic Taxa Revealed through Combined Analysis of Chromosomes and DNA Barcodes: The Species Complex in Armenia and NW Iran.

Vladimir A Lukhtanov, Alexander V Dantchenko
Author Information
  1. Vladimir A Lukhtanov: Department of Karyosystematics, Zoological Institute, Russian Academy of Sciences, Universitetskaya Nab. 1, 199034 Saint-Petersburg, Russia. ORCID
  2. Alexander V Dantchenko: Department of Karyosystematics, Zoological Institute, Russian Academy of Sciences, Universitetskaya Nab. 1, 199034 Saint-Petersburg, Russia.

Abstract

The detection of cryptic species in complexes that have undergone recent speciation is often difficult, since many standard nuclear markers have not yet accumulated differences between closely related taxa, and differences in mitochondrial markers can be leveled out due to mitochondrial introgressions. In these cases, the use of derived chromosomal characters such as non-ancestral chromosomal numbers and/or unusual karyotype features may be a solution to the species delimitation problem. However, non-ancestral but similar karyotypes may arise secondarily as a result of homoplastic evolution, and their interpretation as homologies may lead to incorrect taxonomic conclusions. In our study, we show that the combined use of mitochondrial DNA barcodes and karyotypes helps to solve this problem and identifies cryptic species in situations where each of these markers does not work individually. Using this approach, we show that the fauna of Armenia and adjacent Iran includes the following cryptic taxa of the species complex (haploid chromosome number, in parentheses): ( = 90), , subsp. nov ( close to 90), , sp. nov. ( = 77-79), , sp. nov. ( = 86), ( = 73-75), , subsp. nov. ( = 71-73), ( = 79) and ( = 29-34). is synonymized with .

Keywords

References

  1. Genes (Basel). 2023 Feb 08;14(2): [PMID: 36833364]
  2. Proc Natl Acad Sci U S A. 2023 Oct 3;120(40):e2302424120 [PMID: 37748058]
  3. Chromosome Res. 2023 Jun 10;31(2):16 [PMID: 37300756]
  4. Evolution. 2014 Oct;68(10):2747-56 [PMID: 24964074]
  5. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4): [PMID: 35042805]
  6. BMC Evol Biol. 2019 Jun 6;19(1):116 [PMID: 31170912]
  7. Trends Ecol Evol. 2010 Nov;25(11):660-9 [PMID: 20817305]
  8. Sci Rep. 2017 Aug 15;7(1):8199 [PMID: 28811556]
  9. Proc Natl Acad Sci U S A. 2001 Oct 9;98(21):12084-8 [PMID: 11593019]
  10. Mol Ecol. 2014 Nov;23(22):5462-79 [PMID: 25283587]
  11. Genetics. 2006 May;173(1):419-34 [PMID: 16204214]
  12. Philos Trans R Soc Lond B Biol Sci. 2005 Oct 29;360(1462):1959-67 [PMID: 16214753]
  13. Evolution. 2007 Dec;61(12):2879-97 [PMID: 17941840]
  14. Mol Phylogenet Evol. 2016 Jan;94(Pt A):47-54 [PMID: 26302948]
  15. Ecol Evol. 2023 Sep 05;13(9):e10360 [PMID: 37680961]
  16. Proc Natl Acad Sci U S A. 2022 Oct 4;119(40):e2209139119 [PMID: 36161960]
  17. Comp Cytogenet. 2014 Dec 09;8(4):313-22 [PMID: 25610545]
  18. Evolution. 2003 Mar;57(3):447-59 [PMID: 12703935]
  19. Heredity (Edinb). 2014 Mar;112(3):226-39 [PMID: 24105440]
  20. Chromosome Res. 2024 May 4;32(2):7 [PMID: 38702576]
  21. Mol Ecol. 2009 Oct;18(20):4240-55 [PMID: 19780975]
  22. Insects. 2024 Jan 08;15(1): [PMID: 38249049]
  23. Theor Appl Genet. 1986 Mar;72(2):269-73 [PMID: 24247845]
  24. Evolution. 1998 Feb;52(1):100-108 [PMID: 28568162]
  25. Mol Ecol. 2018 Feb;27(3):613-635 [PMID: 29334414]
  26. BMC Evol Biol. 2009 Dec 26;9:300 [PMID: 20035628]
  27. PLoS Biol. 2009 Oct;7(10):e1000234 [PMID: 19859525]
  28. J Evol Biol. 2008 May;21(3):668-81 [PMID: 18373588]
  29. Nature. 2023 Jun;618(7963):110-117 [PMID: 37198475]
  30. Proc Natl Acad Sci U S A. 2005 May 3;102 Suppl 1:6600-7 [PMID: 15851674]
  31. Mol Phylogenet Evol. 2014 Jan;70:13-28 [PMID: 23994165]
  32. Sci Rep. 2019 May 1;9(1):6732 [PMID: 31043629]
  33. Comp Cytogenet. 2019 Nov 12;13(4):359-366 [PMID: 31762946]
  34. Front Zool. 2007 Mar 07;4:8 [PMID: 17343734]
  35. Syst Biol. 2012 May;61(3):539-42 [PMID: 22357727]
  36. Genetika. 2010 Sep;46(9):1258-65 [PMID: 21061630]
  37. Syst Biol. 2007 Dec;56(6):879-86 [PMID: 18027281]
  38. Insects. 2023 Sep 15;14(9): [PMID: 37754737]
  39. Natl Sci Rev. 2020 Aug;7(8):1401-1407 [PMID: 34692169]
  40. Mol Biol Evol. 2021 Jun 25;38(7):3022-3027 [PMID: 33892491]
  41. Zootaxa. 2015 Jun 25;3975(1):1-139 [PMID: 26249931]
  42. Nat Ecol Evol. 2020 Jun;4(6):820-830 [PMID: 32313176]
  43. Comp Cytogenet. 2016 Dec 20;10(5):1-85 [PMID: 28105291]
  44. Mol Mar Biol Biotechnol. 1994 Oct;3(5):294-9 [PMID: 7881515]
  45. BMC Evol Biol. 2007 Jul 19;7:121 [PMID: 17640383]
  46. Proc Natl Acad Sci U S A. 1983 Apr;80(8):2290-4 [PMID: 6300907]
  47. Methods Mol Biol. 2008;410:275-93 [PMID: 18642605]
  48. J Biol. 2007;6(4):9 [PMID: 18177504]

Grants

  1. 24-14-00047/Russian Science Foundation

Word Cloud

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