Increasing situational awareness through nowcasting of the reproduction number.

Andrea Bizzotto, Giorgio Guzzetta, Valentina Marziano, Martina Del Manso, Alberto Mateo Urdiales, Daniele Petrone, Andrea Cannone, Chiara Sacco, Piero Poletti, Mattia Manica, Agnese Zardini, Filippo Trentini, Massimo Fabiani, Antonino Bella, Flavia Riccardo, Patrizio Pezzotti, Marco Ajelli, Stefano Merler
Author Information
  1. Andrea Bizzotto: Center for Health Emergencies, Bruno Kessler Foundation, Trento, Italy.
  2. Giorgio Guzzetta: Center for Health Emergencies, Bruno Kessler Foundation, Trento, Italy.
  3. Valentina Marziano: Center for Health Emergencies, Bruno Kessler Foundation, Trento, Italy.
  4. Martina Del Manso: Department of Infectious Diseases, Istituto Superiore di Sanit��, Rome, Italy.
  5. Alberto Mateo Urdiales: Department of Infectious Diseases, Istituto Superiore di Sanit��, Rome, Italy.
  6. Daniele Petrone: Department of Infectious Diseases, Istituto Superiore di Sanit��, Rome, Italy.
  7. Andrea Cannone: Department of Infectious Diseases, Istituto Superiore di Sanit��, Rome, Italy.
  8. Chiara Sacco: Department of Infectious Diseases, Istituto Superiore di Sanit��, Rome, Italy.
  9. Piero Poletti: Center for Health Emergencies, Bruno Kessler Foundation, Trento, Italy.
  10. Mattia Manica: Center for Health Emergencies, Bruno Kessler Foundation, Trento, Italy.
  11. Agnese Zardini: Center for Health Emergencies, Bruno Kessler Foundation, Trento, Italy.
  12. Filippo Trentini: Covid Crisis Lab, Bocconi University, Milan, Italy.
  13. Massimo Fabiani: Department of Infectious Diseases, Istituto Superiore di Sanit��, Rome, Italy.
  14. Antonino Bella: Department of Infectious Diseases, Istituto Superiore di Sanit��, Rome, Italy.
  15. Flavia Riccardo: Department of Infectious Diseases, Istituto Superiore di Sanit��, Rome, Italy.
  16. Patrizio Pezzotti: Department of Infectious Diseases, Istituto Superiore di Sanit��, Rome, Italy.
  17. Marco Ajelli: Laboratory for Computational Epidemiology and Public Health, Department of Epidemiology and Biostatistics, Indiana University School of Public Health, Bloomington, IN, United States.
  18. Stefano Merler: Center for Health Emergencies, Bruno Kessler Foundation, Trento, Italy.

Abstract

Background: The time-varying reproduction number R is a critical variable for situational awareness during infectious disease outbreaks; however, delays between infection and reporting of cases hinder its accurate estimation in real-time. A number of nowcasting methods, leveraging available information on data consolidation delays, have been proposed to mitigate this problem.
Methods: In this work, we retrospectively validate the use of a nowcasting algorithm during 18 months of the COVID-19 pandemic in Italy by quantitatively assessing its performance against standard methods for the estimation of R.
Results: Nowcasting significantly reduced the median lag in the estimation of R from 13 to 8 days, while concurrently enhancing accuracy. Furthermore, it allowed the detection of periods of epidemic growth with a lead of between 6 and 23 days.
Conclusions: Nowcasting augments epidemic awareness, empowering better informed public health responses.

Keywords

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MeSH Term

Humans
COVID-19
Italy
Retrospective Studies
SARS-CoV-2
Algorithms
Pandemics
Basic Reproduction Number
Awareness

Word Cloud

Created with Highcharts 10.0.0numberawarenessnowcastingreproductionRsituationalestimationepidemicoutbreaksdelaysmethodsNowcastingdaysBackground:time-varyingcriticalvariableinfectiousdiseasehoweverinfectionreportingcaseshinderaccuratereal-timeleveragingavailableinformationdataconsolidationproposedmitigateproblemMethods:workretrospectivelyvalidateusealgorithm18monthsCOVID-19pandemicItalyquantitativelyassessingperformancestandardResults:significantlyreducedmedianlag138concurrentlyenhancingaccuracyFurthermorealloweddetectionperiodsgrowthlead623Conclusions:augmentsempoweringbetterinformedpublichealthresponsesIncreasingsurveillance

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