Automated Deep Learning-Based Finger Joint Segmentation in 3-D Ultrasound Images With Limited Dataset.

Grigorios M Karageorgos, Jianwei Qiu, Xiaorui Peng, Zhaoyuan Yang, Soumya Ghose, Aaron Dentinger, Zhanpeng Xu, Janggun Jo, Siddarth Ragupathi, Guan Xu, Nada Abdulaziz, Girish Gandikota, Xueding Wang, David Mills
Author Information
  1. Grigorios M Karageorgos: GE Healthcare Technology and Innovation Center, Niskayuna, NY, USA. ORCID
  2. Jianwei Qiu: GE Healthcare Technology and Innovation Center, Niskayuna, NY, USA.
  3. Xiaorui Peng: Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  4. Zhaoyuan Yang: GE Healthcare Technology and Innovation Center, Niskayuna, NY, USA.
  5. Soumya Ghose: GE Healthcare Technology and Innovation Center, Niskayuna, NY, USA.
  6. Aaron Dentinger: GE Healthcare Technology and Innovation Center, Niskayuna, NY, USA.
  7. Zhanpeng Xu: Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  8. Janggun Jo: Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  9. Siddarth Ragupathi: Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  10. Guan Xu: Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  11. Nada Abdulaziz: Division of Rheumatology, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.
  12. Girish Gandikota: Department of Radiology, University of Michigan, Ann Arbor, MI, USA.
  13. Xueding Wang: Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
  14. David Mills: GE Healthcare Technology and Innovation Center, Niskayuna, NY, USA.

Abstract

Ultrasound imaging has shown promise in assessing synovium inflammation associated early stages of rheumatoid arthritis (RA). The precise identification of the synovium and the quantification of inflammation-specific imaging biomarkers is a crucial aspect of accurately quantifying and grading RA. In this study, a deep learning-based approach is presented that automates the segmentation of the synovium in ultrasound images of finger joints affected by RA. Two convolutional neural network architectures for image segmentation were trained and validated in a limited number of 2-D images, extracted from  = 18 3-D ultrasound volumes acquired from  = 9 RA patients, with sparse ground truth annotations of the synovium. Various augmentation strategies were employed to enhance the diversity and size of the training dataset. The utilization of geometric and noise augmentation transforms resulted in the highest dice score (0.768 0.040,  = 6), as determined via six-fold cross-validation. In addition, the segmentation model is used to generate dense 3-D segmentation maps in the ultrasound volumes, based on the available sparse annotations. The developed technique shows promise in facilitating more efficient and standardized workflow for RA screening using ultrasound imaging.

Keywords

Grants

  1. R01 AR060350/NIAMS NIH HHS

MeSH Term

Humans
Deep Learning
Imaging, Three-Dimensional
Ultrasonography
Arthritis, Rheumatoid
Finger Joint
Female
Male
Middle Aged
Synovial Membrane

Word Cloud

Created with Highcharts 10.0.0RAsegmentationultrasoundimagingsynovium3-DUltrasoundpromiserheumatoidarthritisdeepimagesfingerjointsvolumessparseannotationsaugmentation0shownassessinginflammationassociatedearlystagespreciseidentificationquantificationinflammation-specificbiomarkerscrucialaspectaccuratelyquantifyinggradingstudylearning-basedapproachpresentedautomatesaffectedTwoconvolutionalneuralnetworkarchitecturesimagetrainedvalidatedlimitednumber2-Dextracted = 18acquired = 9patientsgroundtruthVariousstrategiesemployedenhancediversitysizetrainingdatasetutilizationgeometricnoisetransformsresultedhighestdicescore768040 = 6determinedviasix-foldcross-validationadditionmodelusedgeneratedensemapsbasedavailabledevelopedtechniqueshowsfacilitatingefficientstandardizedworkflowscreeningusingAutomatedDeepLearning-BasedFingerJointSegmentationImagesLimitedDatasetautomatedlearning

Similar Articles

Cited By