Dog10K: an integrated Dog10K database summarizing canine multi-omics.

Tong Zhou, Shao-Yan Pu, Shao-Jie Zhang, Qi-Jun Zhou, Min Zeng, Jing-Sheng Lu, Xuemei Lu, Ya-Nan Wang, Guo-Dong Wang
Author Information
  1. Tong Zhou: Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
  2. Shao-Yan Pu: Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
  3. Shao-Jie Zhang: Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
  4. Qi-Jun Zhou: Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
  5. Min Zeng: Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
  6. Jing-Sheng Lu: Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
  7. Xuemei Lu: Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
  8. Ya-Nan Wang: Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.
  9. Guo-Dong Wang: Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650201, China. ORCID

Abstract

The diversity observed in canine breed phenotypes, together with their risk for heritabily disorders of relevance to dogs and humans, makes the species an ideal subject for studies aimed at understanding the genetic basis of complex traits and human biomedical models. Dog10K is an ongoing international collaboration that aims to uncover the genetic basis of phenotypic diversity, disease, behavior, and domestication history of dogs. To best present and make the extensive data accessible and user friendly, we have established the Dog10K (http://dog10k.kiz.ac.cn/) database, a comprehensive-omics resource summarizing multiple types of data. This database integrates single nucleotide variants (SNVs) from 1987 canine genomes, de-novo mutations (DNMs) from 43 dog breeds with >40�� sequence, RNA-seq data of 105057 single nuclei from hippocampus, 74067 single cells from leukocytes and 30 blood samples from published canid studies. We provide clear visualization, statistics, browse, searching, and downloading functions for all data. We have integrated three analysis tools, Selscan, LiftOver and AgeConversion, to aid researchers in custom exploration of the comprehensive-omics data. The Dog10K database will serve as a foundational platform for analyzing, presenting and utilizing canine multi-omics data.

Grants

  1. 2021ZD0203900/STI2030-Major Projects
  2. 2022SCP001/Spring City Plan: The High-level Talent Promotion and Training Project of Kunming
  3. 202305AD160021/Yunnan Technology Innovation Talent Program
  4. CASWX2022SDC-SJ02/Cyber Security and Informatization Special Project of Chinese Academy of Sciences
  5. 202201AV070011/Yunnan Fundamental Research Projects
  6. 32170436/National Natural Science Foundation of China
  7. /Technology Support Talent Program of Chinese Academy of Sciences
  8. /Yunnan Revitalization Talent Support Program Yunling Scholar Project

MeSH Term

Dogs
Animals
Polymorphism, Single Nucleotide
Databases, Genetic
Genomics
Phenotype
Mutation
Genome
Multiomics

Word Cloud

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